Job Description P04983 Confidence 99.57% Date Thu Jan 5 10:58:31 GMT 2012 Rank 73 Aligned Residues 391 % Identity 12% Template c3cmvG_ PDB info PDB header:recombination Chain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures Resolution 4.30 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	N	V	Y	P	G	R	V	M	A	L	V	G	E	N	G	A	G	K	S	T	M	M	K	V	L	T	G	I	Y	T	R	D	A	G	T	L	L	W	L	G	K	E	T	T	F	T	G	P	K	S	S	Q	E	A	G	I	G	I	I	H	Q	E	L	N	L	I	P	Q	L	T	I	A	E	N	I	F	L
Query Conservation
Alig confidence																																												.	.														.
Template Conservation																																												.	.														.
Template Sequence		G	A	G	G	L	P	M	G	R	I	V	E	I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q	V	I	A	A	A	Q	R	E	G	K	T	C	A	F	I	.	.	D	A	E	H	A	L	D	P	I	Y	A	R	K	.	L	G	V	D	I	D	N	L	L	C	S	Q	P	D	T	G	E	Q	A	L	E	I
Template Known Secondary structure		S	S	S	S			T	T	S							S	T	T	S	S														T	T	T							.	.		S	S											.		T			G	G	G							S
Template Predicted Secondary structure																																												.	.														.
Template SS confidence
		1052	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.			.	.	.	.	.	.	1100	.	.	.	.	.	.		.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.																				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.																					.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence		G	R	E	F	V	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	K	I	D	W	K	T	M	Y	A	E	A	D	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	K	L	N	L	R	F	K	.	S	D	K	L	V	G	D	L
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		C	D	A	L	A	R	S	G	A	V	D	V	I	V	V	D	S	V	A	A	L	T	P	K	A	E	I	E	G	L	A	A	R	M	M	S	Q	A	M	R	K	L	A	G	N	L	K	Q	S	N	T	L	L	I	F	I	N	Q	G	G	N	A	L	K	F	Y	A	S	V	R	L	D	I	R	R	I	G	A	V	K
Template Known Secondary structure							T	T	S	S									G	G	G											T	T																T	T	T											T	T						S
Template Predicted Secondary structure
Template SS confidence
		1129	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																			.	.																																																								.	.	.	.	.	.
Query SS confidence																			.	.																																																								.	.	.	.	.	.
Query Sequence		S	I	G	D	Q	Q	M	V	E	I	A	K	V	L	S	F	E	.	.	S	K	V	I	I	M	D	E	P	T	D	A	L	T	D	T	E	T	E	S	L	F	R	V	I	R	E	L	K	S	Q	G	R	G	I	V	Y	I	S	H	R	M	K	E	I	F	E	I	C	D	D	V	T	V	F	.	.	.	.	.	.
Query Conservation																			.	.																																																								.	.	.	.	.	.
Alig confidence																			.	.												.																					.	.	.	.										.										.	.	.	.	.	.
Template Conservation																																.																					.	.	.	.										.
Template Sequence		E	G	E	N	V	V	G	S	E	T	R	V	K	V	V	K	N	K	I	A	A	P	F	K	Q	A	E	F	Q	I	.	L	Y	G	E	G	I	N	F	Y	G	E	L	V	D	L	G	V	K	E	K	.	.	.	.	L	I	E	K	A	G	A	W	Y	.	S	Y	K	G	E	K	I	G	Q	G	K	A	N	A	T
Template Known Secondary structure			T	T															S	S	S		T	T								.		T	T	T															T	T	.	.	.	.	S	S				T	T			.			T	T
Template Predicted Secondary structure																																.																					.	.	.	.										.
Template SS confidence
		1233	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.		.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.					.	.	.	.	.	.	.	1290	.		.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.													.	.	.	.	.	280	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	D	G	Q	F	I	A	E	R	E	V	A	S	L	T	E	D	S	L	I	E	M	M	V	G	R	K	L	E	D	Q	Y	P	H	L	D	K	A	P	G	D	I	R	L	K	V	D	N	L	C	G	P	G	V	N	D	V	S	F	T	.	.	.	.	.	.	.	.	.	.	.	.	L	R	K	G	E	I	L	G
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	W	L	K	D	N	P	E	T	A	K	E	I	E	K	K	V	R	E	L	L	L	K	Q	K	A	L	A	A	A	L	G	Q	I	E	K	Q	F	G	K	G	S	I	M	R	L	G	E	D	R	S	M	D	V	E	T	I	S	T	G	S	L	S	L	D	I	A	L	G	A	G	G	L	P	M	G	R	I	V	E
Template Known Secondary structure					T	T	S																																S	S	T	T					T	T													S									S	S	S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		1307	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	G	L	M	G	A	G	R	T	E	L	M	K	V	L	Y	G	A	L	P	R	T	S	G	Y	V	T	L	D	G	H	E	V	V	T	R	S	P	Q	D	G	L	A	N	G	I	V	Y	I	S	E	D	R	K	R	D	G	L	V	L	G	M	S	V	K	E	N	M	S	L	T	A	L	R	Y	F	S	R	A
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q	V	I	A	A	A	Q	R	E	G	K	T	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	I	D	A	E	H	A	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	T	T	S	S														T	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2064	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090																					.	.	.	.	.	.	.	.	.	2100
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.									.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.
Query Sequence		G	G	S	L	K	H	A	D	E	Q	Q	A	V	S	D	F	I	R	L	F	N	V	K	T	P	S	M	E	Q	A	I	G	L	L	S	G	G	N	Q	Q	K	V	A	I	A	R	G	L	M	T	R	P	K	V	L	I	L	D	E	P	T	R	.	.	.	.	.	.	.	.	G	V	D	V	G	A	K	K	E	I
Query Conservation																																																																.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.															.																																			.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	Y	A	R	K	L	G	V	D	I	D	N	L	.	L	C	S	Q	P	D	T	G	E	Q	A	L	E	I	C	D	A	L	A	R	S	G	A	V	D	V	I	V	V	D	S	V	A	A	L	T	P	K	A	E	I	E	G	L	A	A	R	M	M	S	Q	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.								T			G	G	G		.						S														T	T	S										G	G	G																		T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template SS confidence
															2101	.	.	.	.	.	.	.	.	2110	.	.	.	.		.	.	.	.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.	.	.	.
		435	.	.	.	.	440	.	.	.	.		.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		Y	Q	L	I	N	Q	F	K	A	D	.	G	L	S	I	I	L	V	S	S	E	M	P	E	V	L	G	M	S	D	R	I	I	V	M	H	E	G	H	L	S	G	E	F	T	R
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		M	R	K	L	A	G	N	L	K	Q	S	N	T	L	L	I	F	I	N	Q	G	G	N	A	L	K	F	Y	A	S	V	R	L	D	I	R	R	I	G	A	V	K	E	G	E	N
Template Known Secondary structure											T	T	T											T	T																			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		2175	.	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190	.	.	.	.	.	.	.	.	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.	.	.	.	2220