Job Description P04983 Confidence 100.00% Date Thu Jan 5 10:58:31 GMT 2012 Rank 4 Aligned Residues 436 % Identity 22% Template c3bk7A_ PDB info PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10									.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure								.	.	.	.	.	.	.	.									.																																																						.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.									.																																																						.	.	.	.
Query Sequence		L	Q	L	K	G	I	.	.	.	.	.	.	.	.	D	K	A	F	P	G	V	K	.	A	L	S	G	A	A	L	N	V	Y	P	G	R	V	M	A	L	V	G	E	N	G	A	G	K	S	T	M	M	K	V	L	T	G	I	Y	T	R	D	A	G	T	L	L	W	L	G	K	E	T	T	F	T	.	.	.	.
Query Conservation								.	.	.	.	.	.	.	.									.																																																						.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.									.								.																																														.	.	.	.
Template Conservation																																.
Template Sequence		I	S	I	V	N	L	P	E	Q	L	D	E	D	C	V	H	R	Y	G	V	N	A	F	V	L	Y	R	L	P	I	.	V	K	D	G	M	V	V	G	I	V	G	P	N	G	T	G	K	T	T	A	V	K	I	L	A	G	Q	L	I	P	N	L	C	E	D	N	D	S	W	D	N	V	I	R	A	F	R	G	N
Template Known Secondary structure									T	T	G	G	G	S						S	T	T										.			T	T	S								T	T	S	S									T	T	S	S				T	T	T	T											T	T	T	S
Template Predicted Secondary structure																																.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
								72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure		.	.	.	.	.	.																								.	.	.
Query SS confidence		.	.	.	.	.	.																								.	.	.
Query Sequence		.	.	.	.	.	.	G	P	K	S	S	Q	E	A	G	I	G	I	I	H	Q	E	L	N	L	I	P	Q	L	.	.	.	T	I	A	E	N	I	F	L	G	R	E	F	V	N	R	F	G	K	I	D	W	K	T	M	Y	A	E	A	D	K	L	L	A	K	L	N	L	R	F	K	S	D	K	L	V	G	D	L
Query Conservation		.	.	.	.	.	.																								.	.	.
Alig confidence		.	.	.	.	.	.																								.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	Q	N	Y	F	E	R	L	K	N	G	E	I	R	P	V	V	K	P	Q	Y	V	D	L	L	P	K	A	V	K	G	K	V	R	E	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	V	D	E	V	G	K	F	E	E	V	V	K	E	L	E	L	E	N	V	L	D	R	E	L	H	Q	L
Template Known Secondary structure		T											T	S								S		G	G	G	G	G	G	T			S	B						.	.	.	.	.	.	.	.	.	.	.	.	.			T			S	S									T	T		T	T	G	G	G	S	B	G	G	G
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.														.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	G	D	Q	Q	M	V	E	I	A	K	V	L	S	F	E	S	K	V	I	I	M	D	E	P	T	D	A	L	T	D	T	E	T	E	S	L	F	R	V	I	R	E	L	K	S	Q	G	R	G	I	V	Y	I	S	H	R	M	K	E	I	F	E	I	C	D	D	V	T	V	F	R	D	G	Q	F	I	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	G	E	L	Q	R	V	A	I	A	A	A	L	L	R	K	A	H	F	Y	F	F	D	E	P	S	S	Y	L	D	I	R	Q	R	L	K	V	A	R	V	I	R	R	L	A	N	E	G	K	A	V	L	V	V	E	H	D	L	A	V	L	D	Y	L	S	D	V	I	H	V	V	Y	G	E	P	G	V	Y	G
Template Known Secondary structure																	S			S							T	T	T	T																			T	T								S										S							S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.														.	.	.	.	.	.	.	.	260	.	.	.	.	.	.					.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query Sequence		R	E	V	A	S	L	T	E	D	S	L	I	E	M	M	V	G	R	K	L	E	D	Q	Y	P	H	L	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	G	D	I	R	L	K	V	D	N	L	C	G	P	.	.	.	.	G	V	N	D	V	S	F	T	L	R	K	G	E	I	L	G	V	S	G
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation
Template Sequence		I	F	S	K	P	K	G	T	R	N	G	I	N	E	F	L	Q	G	Y	L	K	D	E	N	V	R	F	R	P	Y	E	I	R	F	T	K	L	S	E	R	V	D	V	E	R	E	T	L	V	E	Y	P	R	L	V	K	D	Y	G	S	F	K	L	E	V	E	P	G	E	I	R	K	G	E	V	I	G	I	V	G
Template Known Secondary structure																			T			T	T	T	T					S	S							S	T	T	S																			S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	G	A	G	R	T	E	L	M	K	V	L	Y	G	A	L	P	R	T	S	G	Y	V	T	L	D	G	H	E	V	V	T	R	S	P	Q	D	G	L	A	N	G	I	V	Y	I	S	E	D	R	K	R	D	G	L	V	L	G	M	S	V	K	E	N	M	S	L	T	A	L	R	Y	F	S	R	A	G	G	S
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.																										.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.																										.	.	.
Template Sequence		P	N	G	I	G	K	T	T	F	V	K	M	L	A	G	V	E	E	P	T	E	G	K	V	E	W	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	V	A	Y	K	P	Q	.	.	.	Y	I	K	A	E	Y	E	G	T	V	Y	E	L	L	S	K	I	D	S	S	K	L	N	S	N	.	.	.
Template Known Secondary structure			T	T	S	S										T	S	S			S	B	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	.	.	.	S						S	S	B																	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.																										.	.	.
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.															.	.	.	.	.	.	.	410				.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		L	K	H	A	D	E	Q	Q	A	V	S	D	F	I	R	L	F	N	V	K	T	P	S	M	E	Q	A	I	G	L	L	S	G	G	N	Q	Q	K	V	A	I	A	R	G	L	M	T	R	P	K	V	L	I	L	D	E	P	T	R	G	V	D	V	G	A	K	K	E	I	Y	Q	L	I	N	Q	F	K	A	D	.
Query Conservation																																																																																	.
Alig confidence		.	.	.	.	.	.	.													.																																																												.
Template Conservation		.	.	.	.	.	.	.													.
Template Sequence		.	.	.	.	.	.	.	F	Y	K	T	E	L	L	K	P	L	G	I	.	I	D	L	Y	D	R	N	V	E	D	L	S	G	G	E	L	Q	R	V	A	I	A	A	T	L	L	R	D	A	D	I	Y	L	L	D	E	P	S	A	Y	L	D	V	E	Q	R	L	A	V	S	R	A	I	R	H	L	M	E	K	N
Template Known Secondary structure		.	.	.	.	.	.	.						T					T		.	T	T	T	T	T	S	B	G	G	G																T	S			S							T	T	T	T																				T
Template Predicted Secondary structure		.	.	.	.	.	.	.													.
Template SS confidence
									436	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.			470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		G	L	S	I	I	L	V	S	S	E	M	P	E	V	L	G	M	S	D	R	I	I	V	M	H	.	.	E	G	H	L	S	G	E	F	T	R	E	Q	A
Query Conservation																											.	.
Alig confidence																											.	.
Template Conservation
Template Sequence		E	K	T	A	L	V	V	E	H	D	V	L	M	I	D	Y	V	S	D	R	L	I	V	F	E	G	E	P	G	R	H	G	R	A	L	P	P	M	G	M
Template Known Secondary structure		T								S										S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.