Return to main results Retrieve Phyre Job Id

Job DescriptionP04983
Confidence96.54%DateThu Jan 5 10:58:31 GMT 2012
Rank246Aligned Residues104
% Identity13%Templatec2w58B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:primosome component (helicase loader); PDBTitle: crystal structure of the dnai
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.........70.........80.........90.........100.......
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  YPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFV
Query Conservation    

   


 








  
 
      
 
   
               
  
 
   
    

 


       
Alig confidence 





































.................................








Template Conservation       
 
 
  




 

 


  
           .................................         
Template Sequence  KKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VPELFRELK
Template Known Secondary structure 




SSSSSSS


.................................T
Template Predicted Secondary structure 












.................................
Template SS confidence 















































































   11591160.........1170.........1180.........1190...... ...1200.....
 
   108.110.........120.........130.........140.........150.........160....... ..170.........180......
Predicted Secondary structure 



















.


Query SS confidence 



























































.


















Query Sequence  NRFGKIDWKTMYAEADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDE. PTDALTDTETESLFRVIRE
Query Conservation                    
  
 
          








 

 

   
 





.

  

      
   
  
Alig confidence 













...................................










.


















Template Conservation                ...................................     





 
           
  

  
Template Sequence  HSLQDQTMNEKLDY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IKKVPVLMLDDLGAEASSWVRDDVFGPILQY
Template Known Secondary structure  TT
SSST...................................
SS
SS

T
Template Predicted Secondary structure 



...................................











Template SS confidence 















































































   1206...1210......... 1220.........1230.........1240.........1250
 
   187..190.........
Predicted Secondary structure 


Query SS confidence 












Query Sequence  LKSQGRGIVYISH
Query Conservation 
   
 


 


Alig confidence 












Template Conservation 
       




Template Sequence  RMFENLPTFFTSN
Template Known Secondary structure  TT

S
Template Predicted Secondary structure 




Template SS confidence 












   1252.......1260....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions