Job Description P04983 Confidence 98.41% Date Thu Jan 5 10:58:31 GMT 2012 Rank 89 Aligned Residues 139 % Identity 21% Template c2o8dB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh6; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.							.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.										.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		E	A	L	L	Q	L	K	G	I	D	K	A	F	P	G	V	K	A	L	S	G	A	A	L	N	.	.	.	.	.	.	V	Y	P	G	R	V	M	A	L	V	G	E	N	G	A	G	K	S	T	M	M	K	V	L	T	.	.	.	.	.	.	.	.	.	G	I	Y	T	R	D	A	G	T	L	L	W	L	G	K
Query Conservation																											.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	P	F	L	E	L	K	G	S	R	H	P	C	G	D	D	F	I	P	N	D	I	L	I	G	C	E	E	E	E	Q	E	N	K	A	Y	C	V	L	V	T	G	P	N	M	G	G	K	S	T	L	M	R	Q	A	G	L	L	A	V	M	A	Q	M	G	C	Y	V	P	A	E	V	C	R	L	T	P	I	D	R
Template Known Secondary structure			S																											S	T	T										B			T	T	S	S																T	T	T			B	S	S	S								S	B
Template Predicted Secondary structure
Template SS confidence
		1086	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	T	F	T	G	P	K	S	S	Q	E	A	G	I	G	I	I	H	Q	E	L	N	L	I	P	Q	L	T	I	A	E	N	I	F	L	G	R	E	F	V	N	R	F	G	K	I	D	W	K	T	M	Y	A	E	A	D	K	L	L	A	K	L	N	L	R	F	K	S	D	K	L	V	G	D	L	S	I	G	D
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	T	R	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	F
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1173	.	.	.	.	.																																																																							.	1180	.	.
		147	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure													.	.																									.										.
Query SS confidence													.	.																									.										.
Query Sequence		Q	Q	M	V	E	I	A	K	V	L	S	.	.	F	E	S	K	V	I	I	M	D	E	P	T	D	A	L	T	D	T	E	T	E	S	L	F	.	R	V	I	R	E	L	K	S	Q	.	G	R	G	I	V	Y	I	S	H	R	M	K	E	I	F	E	I	C	D	D
Query Conservation													.	.																									.										.
Alig confidence													.	.																									.										.
Template Conservation
Template Sequence		V	E	L	S	E	T	A	S	I	L	M	H	A	T	A	H	S	L	V	L	V	D	E	L	G	R	G	T	A	T	F	D	G	T	A	I	A	N	A	V	V	K	E	L	A	E	T	I	K	C	R	T	L	F	S	T	H	Y	H	S	L	V	E	D	Y	S	Q	N
Template Known Secondary structure																T	T								S		T	T	S																			T	S																	T	S	S
Template Predicted Secondary structure
Template SS confidence
		1192	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions