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Job DescriptionP04983
Confidence100.00%DateThu Jan 5 10:58:31 GMT 2012
Rank5Aligned Residues442
% Identity18%Templatec2iw3B_
PDB info PDB header:translationChain: B: PDB Molecule:elongation factor 3a; PDBTitle: elongation factor 3 in complex with adp
Resolution2.4 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  LQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGKETTFTGPKSSQEAGIGII
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Template Sequence  LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQ. . . . . . . . . . . . . . . EECRTVYV
Template Known Secondary structure  TTTT

STTSSTT
STT


T...............TTS
T
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   430.........440.........450.........460.........470.........480...... ...490....
 
   85... .90.........100.........110.........120.........130. ........140.........150.........160..
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Query Sequence  HQEL. NLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEADKLLAKLNL. RFKSDKLVGDLSIGDQQMVEIAKVLSFESKV
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Template Sequence  EHDIDGTHSDTSVLDFVFE. . . . . . . . . . . SGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADI
Template Known Secondary structure  T






TTSBT...........T

S
T

SBGGG

TT
S
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   495....500.........510... ......520.........530.........540.........550.........560...
 
   163......170.........180.........190.........200.........210.........220. ........230.........240.
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Query Sequence  IIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIA. EREVASLTEDSLIEMMVGRK
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Template Sequence  LLLDEPTNHLDTVNVAWLVNYLNTC. . . GITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEEL
Template Known Secondary structure  STTTT

S...
S
S

STTS

GGGGGTT
S
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   564.....570.........580........ .590.........600.........610.........620.........630.........640
 
   242.......250.... .....260.........270.........280.........290.........300.....
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Query Sequence  LEDQYPHLDKAPG. . . . . . . . . . . . . . . . DIRLKVDNLCGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT
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Template Sequence  SNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT
Template Known Secondary structure  SGGGG









TT

STTS
S

TT
SS
S
TT
SS

TTSS

S
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   641........650.........660.........670.........680.........690.........700.........710.........720
 
   306...310.........320......
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Query Sequence  SGYVTLDGHEVVTRSPQDGLA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation   
 
                      
                                                     
Template Sequence  SGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETXDRANRQINENDAEAXNKIFKIEGTPRRIAGIH
Template Known Secondary structure 
TT


GGG
TTS
TTTSS
TTTTTTTS



SS
SSSTT

TT
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   721........730.........740.........750.........760.........770.........780.........790.........800
 
   327..330.........340.........350....... ..360.........370.........380.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . NGIVYISEDRKRDGLVLGMSVKENMSLTALR. . YFSRAGGSLKHADEQQAVSDFIRL
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Template Conservation                                                                           
   
  
Template Sequence  SRRKFKNTYEYECSFLLGENIGXKSERWVPXXSVDNAWIPRGELVESHSKXVAEVDXKEALASGQFRPLTRKEIEEHCSX
Template Known Secondary structure  TTSSSSTT


GGG
GGGTTT





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   801........810.........820.........830.........840.........850.........860.........870.........880
 
   382...... .390.........400.........410.........420.........430.........440.........450.........460
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Query Sequence  FNVKTPS. MEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLG
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Template Sequence  LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF. . . EGGVIIITHSAEFTKN
Template Known Secondary structure  TT

S
GGGS
TTT

S
GGGT


...SS
S
TT
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   881........890.........900.........910.........920.........930.........940. ........950.......
 
   461........470........
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Query Sequence  MSDRIIVMHEGHLSGEFT
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Template Sequence  LTEEVWAVKDGRXTPSGH
Template Known Secondary structure  T


BTTB



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   958.960.........970.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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