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Job DescriptionP04983
Confidence100.00%DateThu Jan 5 10:58:31 GMT 2012
Rank43Aligned Residues214
% Identity26%Templatec2hydB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10...... ...20.........30.........40.........50.........60.........70.........80..
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Query Sequence  LQLKGIDKAFPG. . VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGKETTFTGPKSSQEAGIG
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Template Sequence  IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ. IG
Template Known Secondary structure 
S
SSS

S
TT

STTSSTTTTTSS

STTGGGS
T.
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   340.........350.........360.........370.........380.........390.........400.........410...... ..
 
   83......90.........100.........110.........120.........130.........140 .........150.
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Query Sequence  IIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEADKLLAKLNLRFKSDKLVG. . . . . . . . . . . DLSIGDQQMVE
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Template Sequence  LVQQDNILFSD. TVKENILLGRPTAT. . . . . . . . . . DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS
Template Known Secondary structure 
SS



SS.BGGG
SS

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TSTTGGG
B

GGGTTS
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   419420......... 430.........440... ......450.........460.........470.........480.......
 
   152.......160.........170.........180.........190.........200.........210.........220.........230.
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Query Sequence  IAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTED
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Template Sequence  IARIFLNNPPILILDEATSALDLESESIIQEALDVLS. KDRTTLIVAHRLSTIT. HADKIVVIENGHIVETGTHRELIAK
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SSTTTT

T.TTS
SSGGGTT.T
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   488.490.........500.........510.........520.... .....530.........540 .........550.........560.....
 
   232
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Query Sequence  S
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Template Sequence  Q
Template Known Secondary structure  T
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Template SS confidence 
   566
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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