Job Description P0A9F6 Confidence 98.86% Date Thu Jan 5 11:10:04 GMT 2012 Rank 37 Aligned Residues 179 % Identity 13% Template c3onmB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator lrha; PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis Resolution 2.40 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		A	L	T	V	S	L	L	P	S	F	A	I	H	W	L	V	P	R	L	S	S	F	N	S	A	Y	P	G	I	D	V	R	I	Q	A	V	D	R	Q	E	D	K	L	.	A	D	D	V	D	V	A	I	F	Y	G	R	G	N	W	P	G	L	R	V	E	K	L	Y	A	E	Y	L	L	P	V	C	S	P	L	L
Query Conservation																																													.
Alig confidence																													.																.
Template Conservation																													.
Template Sequence		S	L	I	I	G	A	S	D	D	T	A	D	T	L	L	P	F	L	L	N	R	V	A	T	L	Y	P	.	L	A	I	D	V	R	V	K	R	S	P	F	I	A	D	M	L	S	S	G	E	V	D	L	A	I	T	T	A	K	V	D	S	H	P	H	V	I	L	R	T	S	P	T	L	W	Y	C	S	V	D	Y
Template Known Secondary structure													T	T	T									T	T	S			.										G	G	G							T	T	S		S					S	S			S	S	S																T	T
Template Predicted Secondary structure																													.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	G	E	K	P	L	K	T	P	E	D	L	A	K	H	T	L	L	H	D	A	S	R	R	D	W	Q	T	Y	T	R	Q	L	G	L	N	H	I	N	V	Q	Q	G	P	I	F	S	H	S	A	M	V	L	Q	A	A	I	H	G	Q	G	V	A	L	A	N	N	V	M	A	Q	S	E	I	E	A	G	R	L
Query Conservation
Alig confidence												.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.
Template Sequence		Q	F	Q	P	G	E	P	V	P	L	.	.	.	.	.	.	.	V	V	M	D	E	P	S	L	Y	R	E	M	A	I	E	H	L	T	Q	A	G	V	P	W	R	I	A	Y	V	A	S	S	L	S	A	I	R	A	A	V	R	A	G	L	G	V	T	A	R	P	I	E	M	M	S	P	D	L	R	V	L	G	E
Template Known Secondary structure					S	S	S					.	.	.	.	.	.	.				S	S	S														T	T										S	S										T	T	S		B					G	G	G			T	T						G
Template Predicted Secondary structure												.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	P	F	N	D	V	L	V	S	K	N	A	F	Y	L	V	C	H	D	S	Q	A	E	L	G	K	I	A	A	F
Query Conservation
Alig confidence									.	.												.
Template Conservation									.	.												.
Template Sequence		T	E	G	L	P	G	L	.	.	P	E	T	R	Y	V	L	C	K	D	K	.	Q	C	D	N	E	L	A	L	A	I
Template Known Secondary structure		G	G	T					.	.											S	.
Template Predicted Secondary structure									.	.												.
Template SS confidence
		253	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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