Job Description P0A9F6 Confidence 100.00% Date Thu Jan 5 11:10:04 GMT 2012 Rank 1 Aligned Residues 289 % Identity 24% Template c3hhgF_ PDB info PDB header:transcription regulator Chain: F: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: structure of crga, a lysr-type transcriptional regulator from2 neisseria meningitidis. Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	P	P	L	N	A	L	R	V	F	D	A	A	A	R	H	L	S	F	T	R	A	A	E	E	L	F	V	T	Q	A	A	V	S	H	Q	I	K	S	L	E	D	F	L	G	L	K	L	F	R	R	R	N	R	S	L	L	L	T	E	E	G	Q	S	Y	F	L	D	I	K	E	I	F	S	Q	L	T	E	A
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		K	T	.	N	S	E	E	L	T	V	F	V	Q	V	V	E	S	G	S	F	S	R	A	A	E	Q	L	A	M	A	N	S	A	V	S	R	I	V	K	R	L	E	E	K	L	G	V	N	L	L	N	R	T	T	R	Q	L	S	L	T	E	E	G	A	Q	Y	F	R	R	A	Q	R	I	L	Q	E	M	A	A	A
Template Known Secondary structure				.														T	S	S	S					T	T	T	T																		T	S					T	T	S	S	S					T	T
Template Predicted Secondary structure				.
Template SS confidence
		2	.		.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		84	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		T	R	K	L	Q	A	R	S	A	K	G	A	L	T	.	.	V	S	L	L	P	S	F	A	I	H	W	L	V	P	R	L	S	S	F	N	S	A	Y	P	G	I	D	V	R	I	Q	A	V	D	R	Q	E	D	K	L	A	D	D	V	D	V	A	I	F	Y	G	R	G	N	W	P	G	L	R	V	E	K	L	Y
Query Conservation																.	.
Alig confidence																.	.
Template Conservation
Template Sequence		E	T	E	M	L	A	V	H	E	I	P	Q	G	V	L	S	V	D	S	A	M	P	M	V	L	H	L	L	A	P	L	A	A	K	F	N	E	R	Y	P	H	I	R	L	S	L	V	S	S	E	G	Y	I	N	L	I	E	R	K	V	D	I	A	L	R	A	G	E	L	D	D	S	G	L	R	A	R	H	L	F
Template Known Secondary structure								T	T	S																		T												S	T	T									S	S	S					T	T	S	S	S							S				S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		A	E	Y	L	L	P	V	C	S	P	L	L	L	T	G	E	K	P	L	K	T	P	E	D	L	A	K	H	T	L	L	H	D	A	S	R	R	D	W	Q	T	Y	T	R	Q	.	L	G	L	N	H	I	N	V	Q	Q	G	P	I	F	S	H	S	A	M	V	L	Q	A	A	I	H	G	Q	G	V	A	L	A	N
Query Conservation																																															.
Alig confidence																																															.
Template Conservation
Template Sequence		D	S	R	F	R	V	I	A	S	P	E	Y	L	A	K	H	G	T	P	Q	S	T	E	E	L	A	G	H	Q	C	L	G	F	T	E	P	G	S	L	N	T	W	A	V	L	D	A	Q	G	N	P	Y	K	I	S	P	H	F	T	A	S	S	G	E	I	L	R	S	L	C	L	S	G	C	G	I	V	C	L	S
Template Known Secondary structure																					S	S	G	G	G	G	G	T	S						S	S	T	T	G	G	G							S	S	S	S							S	S			S	S										T	T	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		N	V	M	A	Q	S	E	I	E	A	G	R	L	V	C	P	.	F	N	D	V	L	V	S	K	N	A	F	Y	L	V	C	H	D	S	Q	A	E	L	G	K	I	A	A	F	R	Q	W	I	L	A	K	A	A
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		D	F	L	V	D	N	D	I	A	E	G	K	L	I	P	L	L	A	E	Q	T	S	D	K	T	H	P	F	N	A	V	Y	Y	S	D	K	A	V	N	L	R	L	R	V	F	L	D	F	L	V	E	E	L	G
Template Known Secondary structure												T	S	S					T	T	T	B													G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions