Job Description P0A9F6 Confidence 100.00% Date Thu Jan 5 11:10:04 GMT 2012 Rank 3 Aligned Residues 288 % Identity 16% Template c3fzjC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: tsar low resolution crystal structure, tetragonal form Resolution 7.10 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	P	L	N	A	L	R	V	F	D	A	A	A	R	H	L	S	F	T	R	A	A	E	E	L	F	V	T	Q	A	A	V	S	H	Q	I	K	S	L	E	D	F	L	G	L	K	L	F	R	R	R	N	R	S	L	L	L	T	E	E	G	Q	S	Y	F	L	D	I	K	E	I	F	S	Q	L	T	E	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	K	L	Q	T	L	Q	A	L	I	C	I	E	E	V	G	S	L	R	A	A	A	Q	L	L	H	L	S	Q	P	A	L	S	A	A	I	Q	Q	L	E	D	E	L	K	A	P	L	L	V	R	T	K	R	G	V	S	L	T	S	F	G	Q	A	F	M	K	H	A	R	L	I	V	T	E	S	R	R	A	Q
Template Known Secondary structure		.																S									T	T																		T	S		S					S	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.						.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																											.	.	.	.	.
Query SS confidence																													.	.																											.	.	.	.	.
Query Sequence		R	K	L	Q	A	R	S	A	K	G	A	L	T	V	S	L	L	P	S	F	A	I	H	W	L	V	P	.	.	R	L	S	S	F	N	S	A	Y	P	G	I	D	V	R	I	Q	A	V	D	R	Q	E	D	K	L	.	.	.	.	.	A	D	D	V	D	V	A	I	F	Y	G	R	G	N	W	P	G	L	R	V
Query Conservation																													.	.																											.	.	.	.	.
Alig confidence																													.	.																											.	.	.	.	.
Template Conservation
Template Sequence		E	E	I	G	Q	L	R	G	R	W	E	G	H	I	T	F	A	A	S	P	A	I	A	L	A	A	L	P	L	A	L	A	S	F	A	R	E	F	P	D	V	T	V	N	V	R	D	G	M	Y	P	A	V	S	P	Q	L	R	D	G	T	L	D	F	A	L	T	A	A	H	K	H	D	I	D	T	D	L	E	A
Template Known Secondary structure																										T														T	T										T	T	T	T							T	S	S	S								G	G	G	S		T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	L	Y	A	E	Y	L	L	P	V	C	S	P	L	L	L	T	G	E	K	P	L	K	T	P	E	D	L	A	K	H	T	L	L	H	D	A	S	R	R	D	W	Q	T	Y	T	R	Q	L	G	L	N	H	I	N	V	Q	Q	G	P	I	F	S	H	S	A	M	V	L	Q	A	A	I	H	G	Q	G	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	P	L	Y	V	S	D	V	V	I	V	G	Q	R	Q	H	P	M	A	N	A	T	R	L	A	E	L	Q	E	C	R	W	A	F	S	S	A	P	R	G	P	G	A	I	I	R	N	A	F	A	R	Y	G	L	P	E	P	K	L	G	L	V	C	E	S	F	L	A	L	P	G	V	V	A	H	S	D	L	L	T
Template Known Secondary structure															T	T		T	T	T	T			S	G	G	G	G	T	T	S								T	T	S	T	T										T	T													T	T	T							T	S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	N	N	V	M	A	Q	S	E	I	E	A	G	R	L	V	C	P	F	N	D	V	L	V	S	K	N	A	F	Y	L	V	C	H	D	S	Q	A	E	L	G	K	I	A	A	F	R	Q	W	I	L	A	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	M	P	R	T	L	Y	E	R	N	A	F	K	D	Q	L	C	S	I	P	L	Q	D	A	L	P	N	P	T	I	Y	V	L	R	R	H	D	L	P	V	T	P	A	A	A	G	L	I	R	W	I	Q	H	H	A
Template Known Secondary structure										S	S	T	T	G	G	G							S	S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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