Job Description P0A9F6 Confidence 99.36% Date Thu Jan 5 11:10:04 GMT 2012 Rank 35 Aligned Residues 183 % Identity 24% Template c2qsxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: crystal structure of putative transcriptional regulator lysr from2 vibrio parahaemolyticus Resolution 1.64 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	V	S	L	L	P	S	F	A	I	H	W	L	V	P	R	L	S	S	F	N	S	A	Y	P	G	I	D	V	R	I	Q	A	V	D	R	Q	E	D	K	L	A	D	D	V	D	V	A	I	F	Y	G	R	G	N	W	P	G	L	R	V	E	K	L	Y	A	E	Y	L	L	P	V	C	S	P	L	L	L	T
Query Conservation
Alig confidence																																									.	.	.	.																																					.
Template Conservation																																									.	.	.	.																																					.
Template Sequence		L	V	V	D	V	T	P	S	F	A	S	L	W	L	V	P	N	I	N	D	F	H	Q	R	H	P	N	I	R	V	K	I	L	T	G	D	G	A	V	.	.	.	.	G	E	S	D	L	H	V	R	C	L	P	L	S	T	H	Y	E	Y	S	Q	L	L	C	E	E	T	L	L	L	I	G	N	T	N	L	P	.
Template Known Secondary structure														T													T	T										S			.	.	.	.				S								S		S			T	T															T	T	S		.
Template Predicted Secondary structure																																									.	.	.	.																																					.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	K	P	L	K	T	P	E	D	L	A	K	H	T	L	L	H	D	A	S	R	R	D	W	Q	T	Y	T	R	Q	L	G	L	N	H	I	N	V	Q	Q	G	P	I	F	S	H	S	A	M	V	L	Q	A	A	I	H	G	Q	G	V	A	L	A	N	N	V	M	A	Q	S	E	I	E	A	G	R	L	V	C
Query Conservation
Alig confidence		.	.	.	.	.	.																.	.	.
Template Conservation		.	.	.	.	.	.																.	.	.
Template Sequence		.	.	.	.	.	.	K	N	Q	A	I	S	H	Y	P	F	I	P	Q	T	T	.	.	.	R	P	Q	L	W	E	Q	F	K	Q	E	N	D	I	T	Y	H	S	V	G	F	E	H	F	Y	L	A	C	E	A	V	R	X	E	K	G	L	A	L	L	P	D	F	X	A	Q	F	S	I	L	R	G	D	I	Q	H
Template Known Secondary structure		.	.	.	.	.	.				G	G	G	G	S		B			B	T	T	.	.	.		T														B		S			B	S	S										T	T			B														T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.																.	.	.
Template SS confidence
								97	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	N	D	V	L	V	S	K	N	A	F	Y	L	V	C	H	D	S	Q	A	E	L	G	K	I	A	A	F	R	Q	W	I	L	A	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	N	L	K	L	H	S	G	Y	G	Y	Y	V	V	I	P	N	F	R	L	T	S	R	K	V	A	L	F	H	D	W	L	K	D	K	L
Template Known Secondary structure																			G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions