|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | |
. | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | I | R | V | E | I | P | I | D | A | P | G | I | D | A | L | L | R | R | S | F | E | S | D | . |
A | E | A | K | L | V | H | D | L | R | E | D | G | F | L | T | L | G | L | V | A | T | D | D | E | G | Q | V | I | G | Y | V | A | F | S | P | V | D | V | Q | G | E | D | L | Q | W | V | G | M | A | P | L | A | V | D |
Query Conservation |   |
  |
|
|   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |
|   |   |
|   |
|   |
Template Sequence |   |
I | I | F | S | A | S | P | A | N | R | A | A | A | Y | A | L | R | Q | A | V | F | V | E | E | R | G | I | S | A | D | V | E | F | D | V | K | D | T | D | Q | C | E | Y | A | V | L | Y | L | Q | P | D | L | P | I | T | T | L | R | L | E | P | . |
. |
. |
. |
. |
Q | A | D | H | V | X | R | F | G | R | V | C | T | R |
Template Known Secondary structure |   |
 |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | T | T |
|
|
|  |  |  |  | S |
| T | T |
| S | T | T |
|
|  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |
| S | T | T |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | |
|
|
. | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |  | . | . | . |  |  |  |  |
|
|
|  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | K | Y | R | G | Q | G | L | A | R | Q | L | V | Y | E | G | L | D | S | L | N | E | F | G | Y | A | A | V | V | T | L | G | D | P | A | . |
. |
. |
L | Y | S | R | F | G | F | E | L | A | A | H | H | D | L | R | C | R | W | P | G | T | E | S | A | F | Q | V | H | R | L |
Query Conservation |   |
|   |   |
|
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|   |   |   |   |   | . | . | . |   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |
|   |   |
|
|   |
|   |
|
|   |   |   |
|
| . | . | . |   |   |   |   |   |
|   |   |   |   |   |
|   |
|   |
|
Template Sequence |   |
K | A | Y | R | G | H | G | W | G | R | Q | L | L | T | A | A | E | E | W | A | T | Q | R | G | F | T | H | G | E | I | H | G | E | L | T | A | Q | R | F | Y | E | L | C | G | Y | R | V | T | A | G | . |
. |
. |
P | Y | D | E | D | G | A | P | V | V | I | X | H | K | Q | L |
Template Known Secondary structure |   |
G | G | G | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  | G | G | G |  |  |  |  |  |  | T | T |
|  |  |  |  |
| . | . | . |
|
|
| B | T | T | B |
|  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
| . | . | . |
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | |
|
|
. | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
  |