Email l.a.kelley@imperial.ac.uk Description P36678 Date Thu Jan 5 11:53:44 GMT 2012 Unique Job ID 156f5206a625bbe3

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1uv7A_ 99.8 11 PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae 2 d1uv7a_ 99.8 11 Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM 3 c2rjzA_ 97.7 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa 4 c2rddB_ 57.7 17 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 5 c2y9kG_ 47.2 9 PDB header:protein transport Chain: G: PDB Molecule:protein invg; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution 6 d1bjna_ 29.5 9 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 7 c3gr5A_ 28.1 10 PDB header:membrane protein Chain: A: PDB Molecule:escc; PDBTitle: periplasmic domain of the outer membrane secretin escc from2 enteropathogenic e.coli (epec) 8 d1ppjc2 26.1 9 Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 9 d1tp6a_ 24.9 22 Fold:Cystatin-like Superfamily:NTF2-like Family:PA1314-like 10 d1dnla_ 24.9 15 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 11 c3hd7A_ 22.9 22 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 12 d1yioa1 21.4 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 13 d2c0ra1 20.2 7 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 14 d1x4pa1 18.6 18 Fold:Surp module (SWAP domain) Superfamily:Surp module (SWAP domain) Family:Surp module (SWAP domain) 15 d1nrga_ 18.1 11 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 16 c1nrgA_ 18.1 11 PDB header:oxidoreductase Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase; PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase 17 d1t9ma_ 17.1 17 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 18 c2kncA_ 16.5 25 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 19 d1hywa_ 14.4 5 Fold:gpW/XkdW-like Superfamily:Head-to-tail joining protein W, gpW Family:Head-to-tail joining protein W, gpW 20 d1bccc3 12.8 11 Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 21 d1v54d_ not modelled 12.5 27 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV 22 c3mn7S_ not modelled 12.1 20 PDB header:contractile protein/protein binding Chain: S: PDB Molecule:spire ddd; PDBTitle: structures of actin-bound wh2 domains of spire and the implication for2 filament nucleation 23 c2rnjA_ not modelled 11.8 19 PDB header:transcription Chain: A: PDB Molecule:response regulator protein vrar; PDBTitle: nmr structure of the s. aureus vrar dna binding domain 24 c3mn5S_ not modelled 11.8 20 PDB header:contractile protein/protein binding Chain: S: PDB Molecule:protein spire; PDBTitle: structures of actin-bound wh2 domains of spire and the implication for2 filament nucleation 25 c3qm2A_ not modelled 11.4 9 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium 26 c2d89A_ not modelled 10.7 19 PDB header:structural protein, protein binding Chain: A: PDB Molecule:ehbp1 protein; PDBTitle: solution structure of the ch domain from human eh domain2 binding protein 1 27 c2y69Q_ not modelled 10.6 27 PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 28 c2w7vB_ not modelled 10.5 11 PDB header:transport protein Chain: B: PDB Molecule:general secretion pathway protein l; PDBTitle: periplasmic domain of epsl from vibrio parahaemolyticus 29 d2csua2 not modelled 10.4 7 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 30 c2d88A_ not modelled 10.3 24 PDB header:signaling protein, protein binding Chain: A: PDB Molecule:protein mical-3; PDBTitle: solution structure of the ch domain from human mical-32 protein 31 d1ty9a_ not modelled 10.0 14 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 32 d2p8ia1 not modelled 9.4 14 Fold:Ferredoxin-like Superfamily:DOPA-like Family:DOPA dioxygenase-like 33 c2yv2A_ not modelled 9.2 9 PDB header:ligase Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain; PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 aeropyrum pernix k1 34 c3adyA_ not modelled 8.9 16 PDB header:proton transport Chain: A: PDB Molecule:dotd; PDBTitle: crystal structure of dotd from legionella 35 d1dwka2 not modelled 8.8 13 Fold:Cyanase C-terminal domain Superfamily:Cyanase C-terminal domain Family:Cyanase C-terminal domain 36 c2k1aA_ not modelled 8.8 29 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 37 d2f06a2 not modelled 8.6 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 38 c2iv1J_ not modelled 8.5 13 PDB header:lyase Chain: J: PDB Molecule:cyanate hydratase; PDBTitle: site directed mutagenesis of key residues involved in the2 catalytic mechanism of cyanase 39 d1dxxa2 not modelled 8.4 10 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 40 d1sh5a2 not modelled 8.3 19 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 41 c1wylA_ not modelled 8.3 30 PDB header:signaling protein Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology PDBTitle: solution structure of the ch domain of human nedd92 interacting protein with calponin homology and lim domains 42 d2a2ja1 not modelled 8.2 15 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 43 c2kncB_ not modelled 7.9 14 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 44 c1x3uA_ not modelled 7.7 26 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein fixj; PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot 45 c2a2jA_ not modelled 7.6 15 PDB header:oxidoreductase Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase; PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis 46 d1ku3a_ not modelled 7.6 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 47 c2pebB_ not modelled 7.4 10 PDB header:oxidoreductase Chain: B: PDB Molecule:putative dioxygenase; PDBTitle: crystal structure of a putative dioxygenase (npun_f1925) from nostoc2 punctiforme pcc 73102 at 1.46 a resolution 48 d3e9va1 not modelled 7.4 14 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 49 c2d87A_ not modelled 7.2 15 PDB header:structural protein, protein binding Chain: A: PDB Molecule:smoothelin splice isoform l2; PDBTitle: solution structure of the ch domain from human smoothelin2 splice isoform l2 50 d1wb9a4 not modelled 7.2 13 Fold:MutS N-terminal domain-like Superfamily:DNA repair protein MutS, domain I Family:DNA repair protein MutS, domain I 51 c3smtA_ not modelled 7.2 19 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd3; PDBTitle: crystal structure of human set domain-containing protein3 52 d1bkra_ not modelled 7.2 15 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 53 d1ewqa4 not modelled 7.1 18 Fold:MutS N-terminal domain-like Superfamily:DNA repair protein MutS, domain I Family:DNA repair protein MutS, domain I 54 c3cwbC_ not modelled 6.8 11 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome b; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 55 d2z15a1 not modelled 6.8 14 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 56 c3hilB_ not modelled 6.7 38 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: sam domain of human ephrin type-a receptor 1 (epha1) 57 d3dhxa1 not modelled 6.5 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 58 d1ygya3 not modelled 6.5 12 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 59 d2af7a1 not modelled 6.3 6 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 60 c2ogfD_ not modelled 6.2 12 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0408; PDBTitle: crystal structure of protein mj0408 from methanococcus jannaschii,2 pfam duf372 61 d1ulra_ not modelled 6.2 17 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 62 c3f6oB_ not modelled 5.9 18 PDB header:transcription regulator Chain: B: PDB Molecule:probable transcriptional regulator, arsr family PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566 63 d2iw0a1 not modelled 5.9 6 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 64 c2d1uA_ not modelled 5.8 10 PDB header:metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution strcuture of the periplasmic signaling domain of2 feca from escherichia coli 65 d1ku7a_ not modelled 5.6 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 66 c3mgjA_ not modelled 5.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1480; PDBTitle: crystal structure of the saccharop_dh_n domain of mj14802 protein from methanococcus jannaschii. northeast structural3 genomics consortium target mjr83a. 67 c3dmyA_ not modelled 5.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein fdra; PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli 68 c2e8nA_ not modelled 5.4 33 PDB header:transferase, signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1) 69 d1euca2 not modelled 5.2 11 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 70 c2yh5A_ not modelled 5.1 25 PDB header:lipid binding protein Chain: A: PDB Molecule:dapx protein; PDBTitle: structure of the c-terminal domain of bamc 71 c1zzvA_ not modelled 5.1 10 PDB header:membrane protein, metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter feca from3 escherichia coli. 72 d1bhda_ not modelled 5.0 10 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain