Job Description P0AE01 Confidence 40.81% Date Thu Jan 5 11:22:11 GMT 2012 Rank 107 Aligned Residues 130 % Identity 11% Template c1z85B_ PDB info PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution Resolution 2.12 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.								.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.									.	.
Query SS confidence																																											.	.	.	.	.	.	.									.	.
Query Sequence		Q	N	I	R	I	V	L	V	E	T	S	H	T	G	N	M	G	S	V	A	R	A	M	K	T	M	G	L	T	N	L	W	L	V	N	P	L	V	K	P	D	.	.	.	.	.	.	.	S	Q	A	I	A	L	A	A	.	.	G	A	S	D	V	I	G	N	A	H	I	V	D	T	L	D	E	A	L	A	G	C
Query Conservation																																											.	.	.	.	.	.	.									.	.
Alig confidence													.																														.	.	.	.	.	.	.									.	.																	.	.	.	.	.	.
Template Conservation													.																																																															.	.	.	.	.	.
Template Sequence		E	K	L	S	V	V	V	P	I	G	R	.	W	E	R	T	R	F	L	I	E	K	C	V	E	L	G	V	D	E	I	F	F	H	K	F	E	R	S	Q	H	E	I	S	L	D	K	A	K	I	V	V	R	E	A	A	K	Q	C	K	R	Y	L	F	P	K	V	S	F	L	E	K	L	E	.	.	.	.	.	.
Template Known Secondary structure		S											.														T	T		S								T	T																						T		S	B									S	S		.	.	.	.	.	.
Template Predicted Secondary structure													.																																																															.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	V	V	G	T	S	A	R	S	R	T	L	P	W	P	M	L	D	P	R	E	C	G	L	K	S	V	A	E	A	A	N	T	P	V	A	L	V	F	G	R	E	R	V	G	L	T	N	E	E	L	Q	K	C	H	Y	H	V	A	I	A	A	N	P	E	Y	S	S	L	N	L	A	M	A	V	Q	V	I	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																		.													.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																		.													.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	F	S	G	N	V	I	T	L	D	L	D	A	S	Q	N	L	L	D	A	N	L	E	G	S	I	T	V	V	V	G	P	E	G	.	G	F	S	E	K	E	R	E	L	L	R	S	.	.	.	.	.	.	S	T	T	I	V	I	L	R	F	E	T	A	A	I	L	T	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.			S							T	T					T	T	T	S				S	S								T	T	.												T	.	.	.	.	.	.	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																		.													.	.	.	.	.	.
Template SS confidence
													146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190							.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		154	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	I	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions