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Job DescriptionP75828
Confidence99.89%DateWed Jan 25 15:21:03 GMT 2012
Rank4Aligned Residues297
% Identity16%Templatec3qkuB_
PDB info PDB header:replicationChain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: mre11 rad50 binding domain in complex with rad50 and amp-pnp
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MILERVEIVGFRGINRLSLMLEQ. NNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILT
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Template Sequence  MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEK. . .
Template Known Secondary structure 
TT

S
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TT

TTTTB
TT


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Query Sequence  FRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . DGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIF
Template Known Secondary structure  .........................SS
TT
SS

TT
S
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   78.80.........90.........100.........110.........120.........130..
 
   160.........170.........180.........190.........200.........210.........220.........230.........
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Query Sequence  RDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASN
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Template Sequence  LNAIYIRQGQIDAILESDEAREKVVREVLA. . . . . . . . . . . . . . . . . . . . . . . . . ALSKIGELASEIFAEFTEGKYSEVV
Template Known Secondary structure  TT
TT
SSTTSS


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   133......140.........150.........160.. .......170.........180.......
 
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Query Sequence  EQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLP. . . L
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Template Sequence  VRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP
Template Known Secondary structure 
SS
TTGGGS
STTTT
S


SS

TTTSSS
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   769770.........780.........790.........800.........810.........820.........830.........840........
 
   317..320.........330.........340.........350
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Query Sequence  QRIATTNSGELLSLTPVEHVCRLVRESSRVAAWR
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Template Sequence  QVILVSHDEELKDAADHVIRISLENGSSKVEVVS
Template Known Secondary structure  S
SGGGGT
SB
TT

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   849850.........860.........870.........880..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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