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Job DescriptionP75828
Confidence99.11%DateWed Jan 25 15:21:03 GMT 2012
Rank35Aligned Residues208
% Identity16%Templatec3gfoA_
PDB info PDB header:atp binding proteinChain: A: PDB Molecule:cobalt import atp-binding protein cbio 1; PDBTitle: structure of cbio1 from clostridium perfringens: part of2 the abc transporter complex cbionq.
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  ILERVEIV. . . GFRGINRLSLMLEQ. . NNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHI
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Template Sequence  KVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGI
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TTS
TTS

TTSSTTSS

STT


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   7..10.........20.........30.........40.........50.........60.........70.........80......
 
   77..80.........90.........100.........110.........120.........130.........140.........150......
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Query Sequence  ILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPV
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Template Sequence  VFQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI
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S...................................SGGGT

SSBTS


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   87.. 90.........100.........110.........120.........130.
 
   157..160.........170.........180.........190.........200.........210.........220.........230......
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Query Sequence  LRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRR
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Template Sequence  EHLKD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  GGGTT...........................................................................
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   132....
 
   237..240.........250.........260.........270.........280.........290.........300.........310....
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Query Sequence  ASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLL. .
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Template Sequence  . . . . . . . . . . . . . . . KPTHCLSFGQKKRVAIAGVLV. . . . . . . . . . . . MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK
Template Known Secondary structure  ...............SBGGGS
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   137..140.........150....... ..160.........170.........180.........
 
   315....320.........330.........340.........
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Query Sequence  . . PLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAW
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Template Sequence  ELGITIIIATHDIDIVPLY. CDNVFVMK. . EGRVILQ
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SSGGGG.
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   190.........200........ .210...... ...220...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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