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Job DescriptionP75828
Confidence98.63%DateWed Jan 25 15:21:03 GMT 2012
Rank70Aligned Residues184
% Identity12%Templatec3b5wE_
PDB info PDB header:membrane proteinChain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba
Resolution5.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20... ......30.........40.........50.........60.........70.........80.........90.
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Query Sequence  INRLSLMLEQ. . NNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVR
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Template Sequence  LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S
S


TT


SSTTSSTTT
S

BSS
SSSBTTTS
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   359360.........370.........380.........390.........400.........410........
 
   92.......100.........110.........120.........130.........140.........150.........160.........170.
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Query Sequence  RYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNG
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Template Sequence  . . . . . . . . . . . . . . . . . . VALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVI. . . . . .
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S




SS
BSTTTTSSSSTTS

TTTTTTSTTTSSSSSB


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   419420.........430.........440.........450.........460.........470....
 
   172.......180.........190.........200.........210.........220.........230.........240.........250.
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Query Sequence  TVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIIN
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   252.......260.........270.........280.........290.........300.........310.... .....320.........
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Query Sequence  RMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLL. . PLQRIATTNSGELLS
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Template Sequence  . GENGVLLSGGQRQRIAIARALL. . . . . . . . . . RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE
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TTS
SS
TT..........S

S
TTSS

TTTTTSSS

SSGGGTT
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   475....480.........490...... ...500.........510.........520.........530.........540...
 
   330..
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Query Sequence  LTP
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Template Sequence  KAD
Template Known Secondary structure  T
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   544..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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