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Job DescriptionP75828
Confidence99.12%DateWed Jan 25 15:21:03 GMT 2012
Rank33Aligned Residues200
% Identity17%Templatec2yyzA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein
Resolution2.11 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20... ......30.........40.........50.........60.........70.........80..
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Query Sequence  RVEIVGFRGINRLSLMLEQ. . NNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRE
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Template Sequence  KKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE. . . . . . VGMVFQN
Template Known Secondary structure  TT
TT

STTSSTSS

STT
TTS
GGGTT......
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   10.........20.........30.........40.........50.........60.........70...... ...80...
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  SLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDA
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Template Sequence  YALYPHMTVFENIAFPLRARRISKDE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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TTS
GGGSSS
S......................................................
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   84.....90.........100.........
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  RFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VEKRVVEIAR
Template Known Secondary structure  ......................................................................TT
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   110.........
 
   243......250.........260.........270.........280.........290.........300.........310.... ....
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Query Sequence  SWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLL. . . . PLQR
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Template Sequence  KLLIDNLLDRKPTQLSGGQQQRVALARALV. . . . . . . . . . . . KQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS
Template Known Secondary structure  TT
GGGTTS
GGGS
T............T

SSTTTTS


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   120.........130.........140......... 150.........160.........170.........180.......
 
   319320.........330.........340.........
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Query Sequence  IATTNSGELLSLTPVEHVCRLVRESSRVAAW
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Template Sequence  VYVTHDQAEAMTMA. SRIAVFN. . QGKLVQY
Template Known Secondary structure  S

.S..TT
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   188.190.........200. ....... .210.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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