Job Description P75828 Confidence 99.17% Date Wed Jan 25 15:21:03 GMT 2012 Rank 24 Aligned Residues 212 % Identity 18% Template c2d2fA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:sufc protein; PDBTitle: crystal structure of atypical cytoplasmic abc-atpase sufc from thermus2 thermophilus hb8 Resolution 1.90 Å

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		4	.	.	.	.	.	10	.	.	.								.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.											.	.
Query SS confidence												.	.	.	.	.	.	.											.	.
Query Sequence		E	R	V	E	I	V	G	F	R	G	.	.	.	.	.	.	.	I	N	R	L	S	L	M	L	E	Q	.	.	N	N	V	L	I	G	E	N	A	W	G	K	S	S	L	L	D	A	L	T	L	L	L	S	P	E	S	D	L	Y	H	F	E	R	D	D	F	W	F	P	P	G	D	I	N	G	R	E	H	H	L
Query Conservation												.	.	.	.	.	.	.											.	.
Alig confidence												.	.	.	.	.	.	.											.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Q	L	E	I	R	D	L	W	A	S	I	D	G	E	T	I	L	K	G	V	N	L	V	V	P	K	G	E	V	H	A	L	M	G	P	N	G	A	G	K	S	T	L	G	K	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T	T													T	T								S	S	S	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	I	L	T	F	R	E	S	L	P	G	R	H	R	V	R	R	Y	R	P	L	E	A	C	W	T	P	C	T	D	G	Y	H	R	I	F	Y	R	L	E	G	E	S	A	E	D	G	S	V	M	T	L	R	S	F	L	D	K	D	G	H	P	I	D	V	E	D	I	N	D	Q	A	R	H	L	V	R	L	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	D	P	E	Y	T	V	E	R	G	E	I	L	L	D	G	E	N	I	L	E	L	S	P	D	E	R	A	R	K	G	L	F	L	A	F	Q	Y	P	V	E	V	P	G	V	T	I	A	N	F	L	R	L	A	L	Q	A	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T		T	T											T	T				T	T	S								T	T	B								T	T			S		B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																							50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	L	R	L	R	D	A	R	F	M	R	R	I	R	N	G	T	V	P	N	V	P	N	V	E	V	T	A	R	Q	L	D	F	L	A	R	E	L	S	S	H	P	Q	N	L	S	D	G	Q	I	R	Q	G	L	S	A	M	V	Q	L	L	E	H	Y	F	S	E	Q	G	A	G	Q	A	R	Y	R	L	M	R
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	R	E	V	G	V	A	E	F	W	T	K	V	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	A	S	N	E	Q	R	S	W	R	Y	L	D	I	I	N	R	M	I	D	R	P	G	G	R	S	Y	R	V	I	L	L	G	L	F	A	T	L	L	Q	A	K	G	T	L	R	L	D	K	D	A	R	P	L	L	L	I	E	D	P	E	T	R	L	H	P	I	M	L	S	V	A	W	H	L	L	N	L	L
Query Conservation
Alig confidence		.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	A	L	E	L	L	D	W	D	E	S	Y	L	S	R	Y	L	N	E	G	F	S	G	G	E	K	K	R	N	E	I	L	Q	L	L	V	.	.	.	.	.	.	.	.	.	.	.	.	L	E	P	T	Y	A	V	L	D	E	T	D	S	G	L	D	I	D	A	L	K	V	V	A	R	G	V	N	A	M
Template Known Secondary structure		.	.	.						T			G	G	G	G	G	S	B	T	T	T	T																	.	.	.	.	.	.	.	.	.	.	.	.				S							G	G	G	T	T
Template Predicted Secondary structure		.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.													160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
					315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	P	L	Q	R	I	A	T	T	N	S	G	E	L	L	S	L	T	P	V	E	H	V	C	R	L	V	R	E	S	S	R	V	A	A	W
Query Conservation		.	.	.
Alig confidence		.	.	.																											.	.
Template Conservation																															.	.
Template Sequence		R	G	P	N	F	G	A	L	V	I	T	H	Y	Q	R	I	L	N	Y	I	Q	P	D	K	V	H	V	M	M	.	.	D	G	R	V	V	A	T
Template Known Secondary structure			B	T	T	B							S	S	S	G	G	G	G	T	S			S							.	.	T	T
Template Predicted Secondary structure																															.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions