|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | T | I | I | L | V | A | P | A | R | A | E | N | I | G | A | A | A | R | A | M | K | T | M | G | F | S | D | L | R | I | V | D | S | Q | A | H | L | E | P | A | T | R | W | V | A | H | G | S | G | D | I | I | D | N | I | K | V | F | P | T | L | A | E | S | L | H | D | V | D | F | T | V | A | T | T | A | R | S | R |
Query Conservation |   |
|   |
|
|
|   |   |   |   |   |
|   |
|
|
|
|
|
|
|   |   |   |   |
|
|   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
Template Conservation |   |
  |   |
|
|
|   |   |
|   |   |
|   |
|
|
|   |
|
|
|
|
|   |
|
|
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |   |   |   |   | . | . |   |   |   |   |   |   |   |   |   |   |   |
| . | . | . | . | . | . | . | . | . | . |   |
Template Sequence |   |
L | I | L | V | A | V | G | L | E | K | P | G | N | L | G | A | V | L | R | S | A | D | A | A | G | A | E | A | V | L | V | A | G | G | V | D | L | Y | S | P | Q | V | I | R | N | S | T | G | V | V | F | S | L | R | T | . |
. |
L | A | A | S | E | S | E | V | L | D | W | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K |
Template Known Secondary structure |   |
 |  |  |  |  |  | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  | S |
|
|
| T | T |
|  |  |  |  |  |  | T | T | T | G | G | G | T | S |
|  | . | . |  |  |  |
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  | . | . |  |  |
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
117 | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | |
|
. | . | . | . | . | . | . | . | 180 | . | . | . | |
|
|
|
|
|
|
|
|
|
. |
  |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | K | Y | H | Y | Y | A | T | P | V | E | L | V | P | L | L | E | E | K | S | S | W | M | S | H | A | A | L | V | F | G | R | E | D | S | G | L | T | N | E | E | L | A | L | A | D | V | L | T | G | V | P | M | V | A | D | Y | P | S | L | N | L | G | Q | A | V | M | V | Y | C | Y | Q | L | A | T | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|   |   |
|
|
|   |
|   |
|   |   |
|
|   |   |
|   |
|
|   |   |   |   |   |   |
|
|
|
|
|   |
|
|
|
|   |
|
|
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |
|   |   |
|
|
|   |
|   |
|   |   |   |
|   |   |
|   |
|
|   |   |
|   |   |   |
|
|
|
|
|   |
|   |
|
|   |
|   |
|   |   |
|
|
Template Sequence |   |
Q | H | N | L | P | L | V | A | T | T | P | H | A | E | A | L | Y | W | E | A | N | L | R | P | P | V | A | I | A | V | G | P | E | H | E | G | L | R | A | A | W | L | E | A | A | Q | T | Q | V | R | I | P | M | Q | G | Q | A | D | S | L | N | V | S | V | S | A | A | L | L | L | Y | E | A | L | R | Q |
Template Known Secondary structure |   |
 | T | T |
|
|  |  |  |  |
| T | T |
| S | S | B | G | G | G | S |
|
|
| S | S |  |  |  |  |  |
|
| T | T | S |
|
|
|  |  |  |  |  |  |
| S |  |  |  | B |
|
|
|
| S | S |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
185 | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 |
  |