Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGJ7
Confidence100.00%DateWed Jan 25 15:20:34 GMT 2012
Rank16Aligned Residues140
% Identity22%Templatec3ilkB_
PDB info PDB header:structural genomics, unknown functionChain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380; PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20
Resolution2.01 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50...... ...60.........70.........80
Predicted Secondary structure 




















.







Query SS confidence 






















































.























Query Sequence  LNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTA. VTRHHDYRAFLEAENPQRLFALTT
Query Conservation    


     
 


 
 


 
 
   


             
          .          
             
Alig confidence 



































..
















.










...









Template Conservation 
 



 
  
 




 

   

   
 

 
  ..    
   
 

   
    
   
 


...         
Template Sequence  IRIVLIETSHSGNIGSAARAXKTXGLTQLCLVSPKS. . VDEQSYALSAGAENIVKNARVVDSFDEAV. . . DDCSLVIGTS
Template Known Secondary structure  S
S
T

S
S
..
STT
T
SST...TT
S
Template Predicted Secondary structure 















..






...




Template SS confidence 















































































   5....10.........20.........30.........40 .........50.........60......... 70.........
 
   81..... ...90.........100.........110.........120.........130.........140........
Predicted Secondary structure 





............


























Query SS confidence 





. . . . . . . . . . . .





























































Query Sequence  KGTPAH. . . . . . . . . . . . SAVSYQDGDYLMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL
Query Conservation       
............          





  


 
 
    

  
 

  
   




 
 

 


  

 
Alig confidence 





............


























..
































Template Conservation                            





 
  


 
 
  ..

  
 

      




 



 



    
Template Sequence  ARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLK. . CHYHLNIPANPDYSSLNLAXAVQLVSYELRXAF
Template Known Secondary structure 


GGGTTT


S

BTTTB

TT..
S




TTS



Template Predicted Secondary structure 





























..










Template SS confidence 















































































   80.........90.........100.........110.........120.... .....130.........140.........150.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions