Job Description P0AGJ7 Confidence 99.93% Date Wed Jan 25 15:20:34 GMT 2012 Rank 18 Aligned Residues 144 % Identity 16% Template c3dcmX_ PDB info PDB header:transferase Chain: X: PDB Molecule:uncharacterized protein tm_1570; PDBTitle: crystal structure of the thermotoga maritima spout family2 rna-methyltransferase protein tm1570 in complex with s-3 adenosyl-l-methionine Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.														.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.												.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		L	N	I	V	L	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	I	P	P	N	T	G	N	I	I	R	L	C	A	N	T	G	F	R	L	H	I	I	E	P	M	G	F	A	.	.	.	.	.	.	.	.	.	.	.	W	D	D	K	R	L	R	R	A	G	L	D	Y	H	E	F	T	A	.
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.																			.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation
Template Sequence		V	Y	V	A	L	I	H	Y	P	I	K	G	K	D	G	S	I	I	S	T	A	V	T	N	L	D	V	H	D	I	A	R	T	A	R	T	Y	N	L	K	G	Y	Y	I	V	T	N	L	R	A	Q	Q	D	M	V	S	K	M	L	K	F	W	R	E	G	F	G	S	R	Y	N	P	S	R	A	E	S	L	K	L
Template Known Secondary structure									S	S				T	T		S																					T	T		S																								T	S	G	G	G	G	T		S	S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.								.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.
Predicted Secondary structure																	.	.	.	.	.																	.	.	.	.	.	.	.																																			.
Query SS confidence																	.	.	.	.	.																	.	.	.	.	.	.	.																																			.
Query Sequence		V	T	R	H	H	D	Y	R	A	F	L	E	A	E	N	.	.	.	.	.	P	Q	R	L	F	A	L	T	T	K	G	T	P	A	H	S	.	.	.	.	.	.	.	A	V	S	Y	Q	D	G	D	Y	L	M	F	G	P	E	T	R	G	L	P	A	S	I	L	D	A	L	P	A	E	Q	K	I	R	.	I	P
Query Conservation																	.	.	.	.	.																	.	.	.	.	.	.	.																																			.
Alig confidence																	.	.	.	.	.																	.	.	.	.	.	.	.																											.	.							.
Template Conservation																																																																							.	.
Template Sequence		V	K	L	K	S	Y	L	E	D	V	L	E	D	I	E	S	V	E	G	E	R	P	L	I	F	F	T	S	A	K	K	R	E	N	D	I	S	F	E	E	G	R	R	I	I	I	E	T	E	K	P	V	L	I	L	L	G	T	G	W	G	L	P	D	E	I	L	E	I	.	.	S	D	Y	V	L	E	P	I	R
Template Known Secondary structure						S	S													S	S									S	S			S	S		B														S									T	T								T	T	.	.		S			B			T	T
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	P	D	S	R	S	M	N	L	S	N	A	V	S	V	V	V	Y	E	A	W	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	S	D	F	N	H	L	S	V	R	A	A	A	A	I	I	I	D	R	L	I	G	E
Template Known Secondary structure		T	T	S	S																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions