Job Description P0AGJ7 Confidence 96.13% Date Wed Jan 25 15:20:34 GMT 2012 Rank 22 Aligned Residues 137 % Identity 13% Template c2egwB_ PDB info PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.													.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	I	V	L	Y	E	P	E	I	P	P	N	T	G	N	I	I	R	L	C	A	N	T	G	F	R	L	H	.	.	I	I	E	P	M	G	F	A	W	D	D	K	R	L	R	R	.	.	.	.	.	.	.	.	.	.	.	.	A	G	L	D	Y	H	E	F	T	A	V	T	R	H	H	D	Y	R	A	F	L
Query Conservation																															.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	L	Y	Q	S	V	T	V	D	L	K	T	M	D	T	I	V	R	Q	A	T	E	L	G	V	L	T	F	V	P	I	I	S	E	R	S	F	Q	K	E	E	A	I	L	K	K	T	E	K	W	K	R	I	V	I	E	A	M	K	Q	S	R	R	P	I	P	M	E	I	K	K	P	V	R	L	S	D	L	I
Template Known Secondary structure										S	S	T													T	T										T	T	S																									T	T			S										G	G	G
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	E	N	P	Q	R	L	F	A	L	T	T	K	G	T	P	A	H	S	A	V	S	Y	Q	D	G	D	Y	L	M	F	G	P	E	T	R	G	L	P	A	S	I	L	D	A	L	P	A	E	Q	K	I	R	I	P	M	V	P	D	S	R	S	M	N	L	S	N	A	V	S	V	V	V
Query Conservation
Alig confidence																																						.																									.	.
Template Conservation																																						.																									.	.
Template Sequence		P	E	S	E	E	N	I	I	L	D	N	F	Y	E	G	V	K	P	K	D	V	N	L	E	A	K	T	Y	S	V	V	V	G	P	E	G	.	G	F	S	K	R	E	S	Q	I	L	R	E	K	G	F	K	S	V	L	L	E	P	Y	T	.	.	L	R	T	E	T	A	V	V	S	I	V
Template Known Secondary structure				S	S							S	S	S			B		G	G	G	S		T	T		S									T	T	.													T	T							S	S	S		.	.
Template Predicted Secondary structure																																						.																									.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions