Job Description P10151 Confidence 99.49% Date Thu Jan 5 11:32:06 GMT 2012 Rank 37 Aligned Residues 180 % Identity 12% Template c3onmB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator lrha; PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis Resolution 2.40 Å

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	H	L	C	V	C	S	P	L	D	S	I	L	T	S	Q	I	Y	N	H	I	E	Q	I	A	P	N	I	H	V	M	F	K	S	S	L	N	Q	N	T	E	H	Q	L	R	Y	Q	E	T	E	F	V	I	S	Y	E	D	F	H	R	P	E	F	T	S	V	P	L	F	K	D	E	M	V	L	V	A	S	K
Query Conservation
Alig confidence																													.																															.	.
Template Conservation																													.																															.	.
Template Sequence		S	L	I	I	G	A	S	D	D	T	A	D	T	L	L	P	F	L	L	N	R	V	A	T	L	Y	P	.	L	A	I	D	V	R	V	K	R	S	P	F	I	A	D	M	L	S	S	G	E	V	D	L	A	I	T	T	A	K	.	.	V	D	S	H	P	H	V	I	L	R	T	S	P	T	L	W	Y	C	S	V
Template Known Secondary structure													T	T	T									T	T	S			.										G	G	G							T	T	S		S					S	S		.	.		S	S	S																T
Template Predicted Secondary structure																													.																															.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	P	T	I	K	G	P	L	L	K	H	D	V	Y	N	E	Q	H	A	A	V	S	L	D	R	F	A	S	F	S	Q	P	W	Y	D	T	V	D	K	Q	A	S	I	A	Y	Q	G	M	A	M	M	S	V	L	S	V	V	S	Q	T	H	L	V	A	I	A	P	R	W	L	A	E	E	F	A	E	S	L	E
Query Conservation
Alig confidence																					.	.	.	.	.	.																																																					.	.
Template Conservation																					.	.	.	.	.	.																																																					.	.
Template Sequence		D	Y	Q	F	Q	P	G	E	P	V	P	L	V	V	M	D	E	P	S	.	.	.	.	.	.	L	Y	R	E	M	A	I	E	H	L	T	Q	A	G	V	P	W	R	I	A	Y	V	A	S	S	L	S	A	I	R	A	A	V	R	A	G	L	G	V	T	A	R	P	I	E	M	M	S	P	D	L	R	.	.	V
Template Known Secondary structure		T					S	S	S								S	S	S		.	.	.	.	.	.													T	T										S	S										T	T	S		B					G	G	G			T	T			.	.
Template Predicted Secondary structure																					.	.	.	.	.	.																																																					.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.							.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	V	L	P	L	P	L	K	Q	N	S	R	T	C	Y	L	S	W	H	E	A	A	G	R	D	K	G	H	Q	W	M
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		L	G	E	T	E	G	L	P	G	L	P	E	T	R	Y	V	L	C	K	D	K	Q	.	C	D	N	E	L	A	L	A	I
Template Known Secondary structure				G	G	G	T															S		.
Template Predicted Secondary structure																								.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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