Job Description P10151 Confidence 99.73% Date Thu Jan 5 11:32:06 GMT 2012 Rank 35 Aligned Residues 203 % Identity 12% Template c2f78A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate Resolution 2.05 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	E	R	V	F	H	L	C	V	C	S	P	L	D	S	I	L	T	S	Q	I	Y	N	H	I	E	Q	I	A	P	N	I	H	V	M	F	K	S	S	L	N	Q	N	T	E	H	Q	L	R	Y	Q	E	T	E	F	V	I	S	Y	E	D	F	H	R	P	E	F	T	S	V	P	L	F	K	D	E	M	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	E	K	T	I	R	I	G	F	V	G	S	L	L	F	G	L	L	P	R	I	I	H	L	Y	R	Q	A	H	P	N	L	R	I	E	L	Y	E	M	G	T	K	A	Q	T	E	A	L	K	E	G	R	I	D	A	G	F	G	R	L	K	I	S	D	P	A	I	K	R	T	L	L	R	N	E	R	L	M	V
Template Known Secondary structure				S									G	G	G	G	G	T	T													T	T																				T	S		S					S						T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure											.	.	.																							.	.	.
Query SS confidence											.	.	.																							.	.	.
Query Sequence		V	A	S	K	N	H	P	T	I	.	.	.	K	G	P	L	L	K	H	D	V	Y	N	E	Q	H	A	A	V	S	L	D	R	F	.	.	.	A	S	F	S	Q	P	W	Y	D	T	V	D	K	Q	A	S	I	A	Y	Q	G	M	A	M	M	S	V	L	S	V	V	S	Q	T	H	L	V	A	I	A	P	R	W
Query Conservation											.	.	.																							.	.	.
Alig confidence											.	.	.																							.	.	.
Template Conservation
Template Sequence		A	V	H	A	S	H	P	L	N	Q	M	K	D	K	G	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	G	L	E	P	T	K	I	N	E	V	R	E	V	Q	L	A	L	G	L	V	A	A	G	E	G	I	S	L	V	P	A	S
Template Known Secondary structure					T	T	S	G	G	G	G	G	T	T	T		B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	T				S	S					S	S											T	S		B					G	G
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	E	F	A	E	S	L	E	L	Q	V	L	P	L	P	L	K	Q	N	S	R	T	C	Y	L	S	W	H	E	A	A	G	R	D	K	G	H	Q	W	M	E	E	Q	L	V	S	I	C	K	R
Query Conservation
Alig confidence							.	.																										.
Template Conservation							.	.																										.
Template Sequence		T	Q	S	I	Q	.	.	L	F	N	L	S	Y	V	P	L	L	D	P	D	A	I	T	P	I	Y	I	A	V	R	N	M	.	E	E	S	T	Y	I	Y	S	L	Y	E	T	I	R	Q	I	Y	A	Y
Template Known Secondary structure		G	G	G			.	.		T	T						B			T	T											S	S	.
Template Predicted Secondary structure							.	.																										.
Template SS confidence
		247	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions