Job Description P10151 Confidence 100.00% Date Thu Jan 5 11:32:06 GMT 2012 Rank 5 Aligned Residues 289 % Identity 14% Template c1iz1B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:lysr-type regulatory protein; PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	N	L	L	T	V	F	D	A	V	M	Q	E	Q	N	I	T	R	A	A	H	V	L	G	M	S	Q	P	A	V	S	N	A	V	A	R	L	K	V	M	F	N	D	E	L	F	V	R	Y	G	R	G	I	Q	P	T	A	R	A	F	Q	L	F	G	S	V	R	Q	A	L	Q	L	V	Q	N	E	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	E	F	R	Q	L	K	Y	F	I	A	V	A	E	A	G	N	M	A	A	A	A	K	R	L	H	V	S	Q	P	P	I	T	R	Q	M	Q	A	L	E	A	D	L	G	V	V	L	L	E	R	S	H	R	G	I	E	L	T	A	A	G	H	A	F	L	E	D	A	R	R	I	L	E	L	A	G	R	S	G	D
Template Known Secondary structure																		S									T	S																	T	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	G	F	E	P	A	S	S	E	R	V	F	H	L	C	V	C	S	P	L	D	S	I	L	T	S	Q	I	Y	N	H	I	E	Q	I	A	P	N	I	H	V	M	F	K	S	S	L	N	Q	N	T	E	H	Q	L	R	Y	Q	E	T	E	F	V	I	S	Y	E	D	F	H	R	P	E	F	T	S	V	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	R	A	A	A	R	G	D	V	G	E	L	S	V	A	Y	F	G	T	P	I	Y	R	S	L	P	L	L	L	R	A	F	L	T	S	T	P	T	A	T	V	S	L	T	H	M	T	K	D	E	Q	V	E	G	L	L	A	G	T	I	H	V	G	F	S	R	F	F	P	R	H	P	G	I	E	I	V	N	I
Template Known Secondary structure									T	S	S									S	G	G	G	G	T													S	T	T																				T	S		S					S						T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																		.																									.	.	.
Query SS confidence																		.																									.	.	.
Query Sequence		F	K	D	E	M	V	L	V	A	S	K	N	H	P	T	I	.	K	G	P	L	L	K	H	D	V	Y	N	E	Q	H	A	A	V	S	L	D	R	F	A	S	.	.	.	F	S	Q	P	W	Y	D	T	V	D	K	Q	A	S	I	A	Y	Q	G	M	A	M	M	S	V	L	S	V	V	S	Q	T	H	L	V	A
Query Conservation																		.																									.	.	.
Alig confidence																		.																									.	.	.
Template Conservation
Template Sequence		A	Q	E	D	L	Y	L	A	V	H	R	S	Q	S	G	K	F	G	K	T	C	K	L	A	D	L	R	A	V	E	L	T	L	F	P	R	G	G	R	P	S	F	A	D	E	V	I	G	L	F	K	H	A	G	I	E	P	R	I	A	R	V	V	E	D	A	T	A	A	L	A	L	T	M	A	G	A	A	S	S
Template Known Secondary structure												G	G	G	G	G	G	T	T	T				G	G	G	G	T	T	S							S	S	S	S	S														T										S	S										T	T	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	P	R	W	L	A	E	E	F	A	E	S	L	E	L	Q	V	L	P	L	P	L	K	Q	N	S	R	T	C	Y	L	S	W	H	E	A	A	G	R	D	K	G	H	Q	W	M	E	E	Q	L	V	S	I	C	K
Query Conservation
Alig confidence													.	.																										.
Template Conservation													.	.																										.
Template Sequence		I	V	P	A	S	V	A	A	I	R	W	.	.	P	D	I	A	F	A	R	I	V	G	T	R	V	K	V	P	I	S	C	I	F	R	K	E	K	.	Q	P	P	I	L	A	R	F	V	E	H	V	R	R	S	A	K
Template Known Secondary structure										S			.	.	T	T									S	S											S	S	S	.																T	T
Template Predicted Secondary structure													.	.																										.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions