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Job DescriptionP07109
Confidence100.00%DateThu Jan 5 11:00:09 GMT 2012
Rank58Aligned Residues242
% Identity24%Templatec2vf7B_
PDB info PDB header:dna-binding proteinChain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.. .......60.....
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Query Sequence  SENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN. . . . . . . . . . . . . . . . FLEKPSEGSIVVN
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Template Sequence  PAGWLELNGVT. . . . . RNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQGSARLGGDLAQITRLVRVD
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S.....TTSSSTTSSTTS



SSGGG


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   499500......... 510.........520.........530.........540.........550.........560.........570...
 
   66...70.........80.........90
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Query Sequence  GQTINLVRDKDGQLKVADKNQLRLL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  QKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVPSVYAPCPVCHGTRYNAE
Template Known Secondary structure  SS
S
SSTT

TTTTSSTS


TTSS
SSSSSSB
SSSTT






TTTSSS
B
TT
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   591........600.........610.........620.........630.........640.........650.........660.........670
 
   91........100.........110.........120.........130.........140.........150.........160.........170
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Query Sequence  RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME
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Template Sequence  TLEVEYRGKNIADVLALTVDEAHDFF. . . . . . . ADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRS
Template Known Secondary structure  GGG

SSS

T
BT.......TT
T
TTSBTT

GGG

SS
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   676...680.........690.........700. ........710.........720.........730.........740........
 
   171. .......180.........190.........200.........210.........220..... ....230.........240.
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Query Sequence  PE. . . VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFL. . . . . . HQGKIEEEGAPEQLFG
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Template Sequence  GRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV. AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ
Template Known Secondary structure  SSS

S
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   749750.........760.........770.........780.........790...... ...800.........810.........820.......
 
   242.......250.......
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Query Sequence  NPQSPRLQRFLKGSLK
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Template Sequence  AAGS. VTAPYLRAALR
Template Known Secondary structure 
SS
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   828.830. ........840..
 
Download:Text version

No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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