Job Description P07109 Confidence 100.00% Date Thu Jan 5 11:00:09 GMT 2012 Rank 30 Aligned Residues 229 % Identity 28% Template c2hydB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		S	E	N	K	L	N	V	I	D	L	H	K	R	Y	G	E	.	.	H	E	V	L	K	G	V	S	L	Q	A	N	A	G	D	V	I	S	I	I	G	S	S	G	S	G	K	S	T	F	L	R	C	I	N	F	L	E	K	P	S	E	G	S	I	V	V	N	G	Q	T	I	N	L	V	R	D	K	D	G	Q	L
Query Conservation																		.	.
Alig confidence																		.	.																																																									.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		K	Q	G	R	I	D	I	D	H	V	S	F	Q	Y	N	D	N	E	A	P	I	L	K	D	I	N	L	S	I	E	K	G	E	T	V	A	F	V	G	M	S	G	G	G	K	S	T	L	I	N	L	I	P	R	F	Y	D	V	T	S	G	Q	I	L	I	D	G	H	N	I	K	D	F	L	.	.	.	.	.	.
Template Known Secondary structure			S												S		S	S	S			S										T	T								S	T	T	S	S						T	T	T	T	T	S	S			S							T	T			G	G	G	S		.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.											.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	A	D	K	N	Q	L	R	L	L	R	T	R	L	T	M	V	F	Q	H	F	N	L	W	S	H	M	T	V	L	E	N	V	M	E	A	P	I	Q	V	L	G	L	S	K	Q	E	A	R	E	R	A	V	K	Y	L	A	K	V	G	I	D	E	R	A	Q	G	.	.	.	.	.	.	.	.	.	.	K	Y
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																					.															.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																					.															.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	T	G	S	L	R	N	Q	I	G	L	V	Q	Q	D	N	I	L	F	S	D	.	T	V	K	E	N	I	L	L	G	R	P	T	A	T	.	.	.	.	.	.	.	D	E	E	V	V	E	A	A	K	M	A	N	A	H	D	F	I	M	N	L	P	Q	G	Y	D	T	E	V	G	E	R
Template Known Secondary structure		.	.	.	.	.	.	.							T						S	S					S	S	.	B						G	G	G		S	S			.	.	.	.	.	.	.											T	T							T	S	T	T	G	G	G		B			G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.																					.															.	.	.	.	.	.	.
Template SS confidence
									410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.	440	.	.	.								.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	H	L	S	G	G	Q	Q	Q	R	V	S	I	A	R	A	L	A	M	E	P	E	V	L	L	F	D	E	P	T	S	A	L	D	P	E	L	V	G	E	V	L	R	I	M	Q	Q	L	A	E	E	G	K	T	M	V	V	V	T	H	E	M	G	F	A	R	H	V	S	T	H	V	I	F	L	H	Q	G	K
Query Conservation
Alig confidence																																																						.																.
Template Conservation																																																						.																.
Template Sequence		G	V	K	L	S	G	G	Q	K	Q	R	L	S	I	A	R	I	F	L	N	N	P	P	I	L	I	L	D	E	A	T	S	A	L	D	L	E	S	E	S	I	I	Q	E	A	L	D	V	L	S	K	D	.	R	T	T	L	I	V	A	H	R	L	S	T	I	T	H	.	A	D	K	I	V	V	I	E	N	G	H
Template Known Secondary structure		G	T	T	S																			S						S	T	T	T	T																	T	T	T	.	S							S	S	G	G	G	T	T	T	.		S							T	T
Template Predicted Secondary structure																																																						.																.
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.		.	.	.	530	.	.	.	.	.	.	.	.	.	540	.		.	.	.	.	.	.	.	.	550	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	E	E	G	A	P	E	Q	L	F	G	N	P	Q	S	P	R	L	Q	R	F	L	K	G	S
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		I	V	E	T	G	T	H	R	E	L	I	A	K	.	.	Q	G	A	Y	E	H	L	Y	S	I	Q
Template Known Secondary structure														T	.	.	T	S							T	T	T
Template Predicted Secondary structure															.	.
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.			.	.	.	.	570	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions