Job Description P00944 Confidence 100.00% Date Thu Jan 5 10:57:16 GMT 2012 Rank 12 Aligned Residues 301 % Identity 19% Template c3ktcB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution Resolution 1.54 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		H	L	R	F	A	A	C	Y	W	H	T	F	C	W	N	G	A	D	M	F	G	V	G	A	F	N	R	P	W	Q	Q	P	G	E	A	L	A	L	A	K	R	K	A	D	V	A	F	E	F	F	H	K	L	.	H	V	P	F	Y	C	F	H	D	V	D	V	S	P	E	G	A	S	L	K	E	Y	I	N	N	F
Query Conservation																																																							.
Alig confidence											.																	.	.	.	.	.											.	.	.	.	.	.	.	.					.																	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																	.	.	.	.	.											.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	P	E	F	G	A	G	L	W	.	H	F	A	N	Y	I	D	R	Y	A	V	D	G	Y	G	P	.	.	.	.	.	A	L	S	T	I	D	Q	I	N	A	.	.	.	.	.	.	.	.	A	K	E	V	G	E	L	S	Y	V	D	L	P	Y	P	F	T	P	G	V	T	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									G	G	.	G	G	S					S	S		T	T		S	S		.	.	.	.	.											.	.	.	.	.	.	.	.					S	S									S		S	T	T			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.																	.	.	.	.	.											.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40									.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	M	V	D	V	L	A	G	K	Q	E	E	S	G	V	K	L	L	W	G	T	A	N	C	F	T	N	P	R	Y	G	A	G	A	A	T	N	P	D	P	E	V	F	S	W	A	A	T	Q	V	V	T	A	M	E	A	T	H	K	L	G	G	E	N	Y	V	L	W	G	G	R	E	G	Y	E	T	L	L	N
Query Conservation
Alig confidence		.	.	.																											.
Template Conservation		.	.	.																											.
Template Sequence		.	.	.	L	S	E	V	K	D	A	L	K	D	A	G	L	K	A	I	G	I	T	P	E	I	Y	L	Q	K	.	W	S	R	G	A	F	T	N	P	D	P	A	A	R	A	A	A	F	E	L	X	H	E	S	A	G	I	V	R	E	L	G	A	N	Y	V	K	V	W	P	G	Q	D	G	W	D	Y	P	F	Q
Template Known Secondary structure		.	.	.												T										T	T	S	G	G	.	G	T	T		S	T	T		S	S																						T		S							T	T				S	S	T	T	S
Template Predicted Secondary structure		.	.	.																											.
Template SS confidence
					62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	L	R	Q	E	R	E	Q	L	G	R	F	M	Q	M	V	V	E	H	K	H	K	I	G	F	Q	G	T	L	L	I	E	P	K	P	Q	E	P	T	K	H	Q	Y	D	Y	D	A	A	T	V	Y	G	F	L	K	Q	F	G	L	E	K	E	I	K	L	N	I	E	A	N	H	A	T	L	A	G	H	S	F
Query Conservation
Alig confidence																										.	.	.	.																																			.
Template Conservation																										.	.	.	.																																			.
Template Sequence		V	S	H	K	N	L	W	K	L	A	V	D	G	X	R	D	L	A	G	A	N	P	D	V	.	.	.	.	K	F	A	I	E	Y	K	P	R	E	P	R	V	K	X	T	W	D	S	A	A	R	T	L	L	G	I	E	D	I	G	L	D	N	.	V	G	V	L	L	D	F	G	H	A	L	Y	G	G	E	S	P
Template Known Secondary structure		S																			T		T	T	S	.	.	.	.								S		S	S	S	S			S	S		S												T		T	T	.													T	T
Template Predicted Secondary structure																										.	.	.	.																																			.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.					.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		H	H	E	I	A	T	A	I	A	L	G	L	F	G	S	V	D	A	N	R	G	D	A	Q	L	G	W	D	T	D	Q	.	F	P	N	S	V	E	E	N	A	L	V	M	Y	E	I	L	K	A	G	G	F	T	T	G	G	L	N	F	D	A	K	V	R	R	Q	S	T	D	K	Y	D	L	F	Y	G	H	I	G
Query Conservation																																	.
Alig confidence																									.	.							.																							.													.	.	.	.			.	.	.	.	.
Template Conservation																									.	.																														.													.	.	.	.			.	.	.	.	.
Template Sequence		A	D	S	A	Q	L	I	I	D	R	G	R	L	F	G	X	D	V	N	D	N	L	R	.	.	G	W	D	D	D	L	V	V	G	T	V	H	X	T	E	I	F	E	F	F	Y	V	L	K	I	N	N	W	Q	.	G	V	W	Q	L	D	Q	F	P	F	R	E	.	.	.	.	N	H	.	.	.	.	.	V	E
Template Known Secondary structure											T	T							B		B			S	.	.	S	S				B		T	T	S	S															T	T			.										T	T	S	.	.	.	.			.	.	.	.	.
Template Predicted Secondary structure																									.	.																														.													.	.	.	.			.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.					.	.						.	280
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	D	T	M	A	L	A	L	K	I	A	A	R	M	I	E	D	G	E	L	D	K	R	I	A	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	Q	L	S	I	R	F	L	K	H	I	Y	R	A	L	D	K	L	D	I	P	A	L	Q	A	A	Q
Template Known Secondary structure																				S
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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