Job Description P00944 Confidence 99.68% Date Thu Jan 5 10:57:16 GMT 2012 Rank 23 Aligned Residues 254 % Identity 13% Template c3ju2A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021 Resolution 1.80 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	V	A	F	E	F	F	H	K	L	H	V	P	F	Y	C	F	H	D	V	D	V	S	P	E	G	A	S	L	K	E	Y	I	N	N	F	A	Q	M	V	D	V	L	A	G	K	Q	E	E	S	G	V	K	L	L	W	G	T	A	N	C	F	T	N	P	R	Y	G	A	G	A	A	T	N	P	D	P	E	V
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Sequence		F	A	E	A	V	D	I	C	L	K	H	G	I	T	A	I	A	P	W	R	D	Q	V	A	A	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	E	A	G	R	I	V	R	A	N	G	L	K	L	T	G	L	C	R	G	G	F	.	.	.	.	.	.	.	.	.	F	P	A	P	D	A	S	G
Template Known Secondary structure												T	T							B									.	.	.	.	.	.	.	.	.	.	.	.	.											T	T				S								.	.	.	.	.	.	.	.	.				S	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.														.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.										.	70	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		F	S	W	A	A	T	Q	V	V	T	A	M	E	A	T	H	K	L	G	G	E	N	Y	V	L	W	G	G	R	E	G	Y	E	T	L	L	N	T	D	L	R	Q	E	R	E	Q	L	G	R	F	M	Q	M	V	V	E	H	K	H	K	I	G	F	Q	G	T	L	L	I	E	P	K	P	Q	E	P	.	T	K	H
Query Conservation																																																																														.
Alig confidence																																.	.	.																														.	.													.
Template Conservation																																.	.	.																														.	.
Template Sequence		R	E	K	A	I	D	D	N	R	R	A	V	D	E	A	A	E	L	G	A	D	C	L	V	L	V	A	G	G	L	.	.	.	P	G	G	S	K	N	I	D	A	A	R	R	M	V	V	E	G	I	A	A	V	L	P	H	A	R	A	A	G	.	.	V	P	L	A	I	E	P	L	H	P	M	Y	A	A	D	R
Template Known Secondary structure																				T	B	S							B			.	.	.		T	T																										T	.	.										G	G	G	T	T	T	T
Template Predicted Secondary structure																																.	.	.																														.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		Q	Y	D	Y	D	A	A	T	V	Y	G	F	L	K	Q	F	G	L	E	K	E	I	K	L	N	I	E	A	N	H	A	T	L	A	G	H	S	F	H	H	E	I	A	T	A	I	A	L	G	L	F	G	S	V	D	A	N	R	G	D	A	Q	L	G	W	D	T	D	Q	F	.	.	.	P	N	S	V	E	E	N
Query Conservation																																																																								.	.	.
Alig confidence																			.			.																									.																									.	.	.
Template Conservation																			.			.																									.
Template Sequence		A	C	V	N	T	L	G	Q	A	L	D	I	C	E	T	L	G	.	P	G	.	V	G	V	A	I	D	V	Y	H	V	W	W	D	P	D	L	A	N	Q	I	A	R	A	G	.	K	M	K	A	I	L	A	H	H	I	C	D	W	L	V	P	T	K	D	M	L	T	D	R	G	M	M	G	D	G	V	I	D	L
Template Known Secondary structure		B	S																.	T	T	.											T	T		T	T										.		T	T									B			S	S				S	S	S	B		B		T	T	S	S	S
Template Predicted Secondary structure																			.			.																									.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	V	M	Y	E	I	L	K	A	G	G	F	T	T	G	G	L	N	F	D	A	K	V	R	R	Q	S	T	D	K	Y	D	L	F	Y	G	H	I	G	A	M	D	T	M	A	L	A	L	K	I	A	A	R	M	I	E	D
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	I	R	R	R	I	E	A	A	G	F	H	G	A	Q	E	V	E	I	F	S	A	D	N	W	W	K	R	P	A	D	E	.	.	.	.	.	.	.	.	.	.	V	I	A	T	C	V	E	R	Y	R	N	C	C	E	G
Template Known Secondary structure											T	T											B	T	T	T	G	G	G	S					.	.	.	.	.	.	.	.	.	.													T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.											.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions