Job Description P00944 Confidence 100.00% Date Thu Jan 5 10:57:16 GMT 2012 Rank 11 Aligned Residues 356 % Identity 18% Template c2i56A_ PDB info PDB header:isomerase, metal-binding protein Chain: A: PDB Molecule:l-rhamnose isomerase; PDBTitle: crystal structure of l-rhamnose isomerase from pseudomonas2 stutzeri with l-rhamnose Resolution 1.97 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	M	E	E	H	L	R	F	A	A	C	Y	W	H	T	F	C	W	N	G	A	D	M	F	G	V	G	A	F	N	R	P	W	Q	Q	P	G	E	A	L	A	L	A	K	R	K	A	D	V	A	F	E	F	F	H	K	L	H	V	P	F	Y	C	F	H	D	V	D	V	S	P	E	G	A	S	L	K	E	Y
Query Conservation
Alig confidence							.										.	.											.	.	.	.	.	.																																		.	.	.	.
Template Conservation							.										.	.											.	.	.	.	.	.																																		.	.	.	.
Template Sequence		A	K	V	E	K	.	F	F	V	A	V	P	S	W	G	.	.	V	G	T	G	G	T	R	F	A	R	.	.	.	.	.	.	F	P	G	T	G	E	P	R	G	I	F	D	K	L	D	D	C	A	V	I	Q	Q	L	T	R	A	T	P	N	V	S	L	H	.	.	.	.	I	P	W	D	K	A	D	P	K	E
Template Known Secondary structure					T	T	.				B			G	G	G	.	.	S	S			B		S	S		B	.	.	.	.	.	.				S	S				S																S								B	.	.	.	.	T	T	T	T		S
Template Predicted Secondary structure							.										.	.											.	.	.	.	.	.																																		.	.	.	.
Template SS confidence
		45	.	.	.	.		50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.							.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		I	N	N	F	A	Q	M	V	D	V	L	A	G	K	Q	E	E	S	G	V	K	L	L	W	G	T	A	N	C	F	T	N	P	R	.	.	.	.	.	Y	G	A	G	A	A	T	N	P	D	P	E	V	F	S	W	A	A	T	Q	V	V	T	A	M	E	A	T	H	K	L	G	G	E	N	Y	V	L	W	G	G
Query Conservation																																				.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	L	K	A	R	G	D	A	L	G	L	G	F	D	A	M	N	S	N	T	F	S	D	A	P	G	Q	A	H	S	Y	K	Y	G	S	L	S	H	T	N	A	A	T	R	A	Q	A	V	E	H	N	L	E	C	I	E	I	G	K	A	I	G	S	K	A	L	T	V	W	I	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.									T											S	S			T	T		S	S			T	T		S	T	T		S	S																						T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.																							.
Query SS confidence																																	.																							.
Query Sequence		R	E	G	Y	E	T	L	L	N	T	D	L	R	Q	E	R	E	Q	L	G	R	F	M	Q	M	V	V	E	H	K	H	.	K	I	G	F	Q	G	T	L	L	I	E	P	K	P	Q	E	P	T	K	H	Q	Y	.	D	Y	D	A	A	T	V	Y	G	F	L	K	Q	F	G	L	E	K	E	I	K	L	N	I	E
Query Conservation																																	.																							.
Alig confidence		.																															.			.	.	.	.																	.																.			.
Template Conservation		.																																		.	.	.	.																																	.			.
Template Sequence		.	D	G	S	N	F	P	G	Q	S	N	F	T	R	A	F	E	R	Y	L	S	A	M	A	E	I	Y	K	G	L	P	D	D	W	.	.	.	.	K	L	F	S	E	H	K	M	Y	E	P	A	F	Y	S	T	V	V	Q	D	W	G	T	N	Y	L	I	A	Q	T	L	G	.	P	K	.	A	Q	C	L	V	D
Template Known Secondary structure		.				S	S	T	T	S	S																			T			T	T		.	.	.	.								S	S	S	S		S	S			T	T		S													.	T	T	.
Template Predicted Secondary structure		.																																		.	.	.	.																																	.			.
Template SS confidence
			182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.		.	250	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.			.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.					.	.	340	.	.
Predicted Secondary structure																																																		.	.																						.	.	.	.
Query SS confidence																																																		.	.																						.	.	.	.
Query Sequence		A	N	H	A	T	L	A	G	H	S	F	H	H	E	I	A	T	A	I	A	L	G	L	F	G	S	V	D	A	N	R	G	D	A	Q	L	G	W	D	T	D	Q	F	P	N	S	V	E	.	.	E	N	A	L	V	M	Y	E	I	L	K	A	G	G	F	T	T	G	G	L	N	.	.	.	.	F	D	A	K	V
Query Conservation																																																		.	.																						.	.	.	.
Alig confidence					.																												.	.	.															.	.																						.	.	.	.
Template Conservation					.																												.	.	.
Template Sequence		L	G	H	.	H	A	P	N	T	N	I	E	M	I	V	A	R	L	I	Q	F	G	K	L	G	G	F	H	F	N	D	.	.	.	S	K	Y	G	D	D	D	L	D	A	G	A	I	E	P	Y	R	L	F	L	V	F	N	E	L	V	D	A	E	A	R	G	V	K	G	F	H	P	A	H	M	I	D	Q	S	H
Template Known Secondary structure		G	G	G	.	S		T	T													T	T									B	.	.	.		S	S	S	S			B		T	T	S	S																		T	T		T	T
Template Predicted Secondary structure					.																												.	.	.
Template SS confidence
		255	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380								.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.								.
Query SS confidence																																								.	.	.	.	.	.	.								.
Query Sequence		R	R	Q	S	T	D	K	Y	D	L	F	Y	G	H	I	G	A	M	D	T	M	A	L	A	L	K	I	A	A	R	M	I	E	D	G	E	L	D	.	.	.	.	.	.	.	K	R	I	A	Q	R	Y	.	S	G	W	N	S	E	L	G	Q	Q	I	L	K	G	Q	M	S	L	A	D	L	A	K	Y	A	Q	E
Query Conservation																																								.	.	.	.	.	.	.								.
Alig confidence							.																																	.	.	.	.	.	.	.								.																									.
Template Conservation							.																																																																								.
Template Sequence		N	V	T	D	P	.	I	E	S	L	I	N	S	A	N	E	I	R	R	A	Y	A	Q	A	L	L	V	D	R	A	A	L	S	G	Y	Q	E	D	N	D	A	L	M	A	T	E	T	L	K	R	A	Y	R	T	D	V	E	P	I	L	A	E	A	R	R	R	T	G	G	A	V	D	P	V	A	T	Y	.	R	A
Template Known Secondary structure		S	S	S			.																					S											T	T														T	S													T	T			S	S						.
Template Predicted Secondary structure							.																																																																								.
Template SS confidence
		331	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	L	S	P	V	H	Q	S	G	R	Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	Y	R	A	R	V	A	A	E	R	P	A
Template Known Secondary structure			T									S
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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