Return to main results Retrieve Phyre Job Id

Job DescriptionP46888
Confidence34.33%DateThu Jan 5 12:04:36 GMT 2012
Rank66Aligned Residues118
% Identity9%Templatec2j4dA_
PDB info PDB header:dna-binding proteinChain: A: PDB Molecule:cryptochrome dash; PDBTitle: cryptochrome 3 from arabidopsis thaliana
Resolution1.9 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50.........60.........70.........80.........90.........100.
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  KAVSIARPVKGHISLITLASDPEMYNQLAAPMLEDLRSVMHEETQSFLDKLIQDAGYPVDKTFIAYGELSEHILEVCHKH
Query Conservation   
  

      
  
 
                                                
     
       
Alig confidence 







































.






































Template Conservation   

  
      



 
 

                

 . 



 
  
   
   

 
 
  
     
  
    
Template Sequence  DALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRG. GFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDF
Template Known Secondary structure  T
S
GGGGSB
TTT

BSS
.TT


S
Template Predicted Secondary structure 
















.





Template SS confidence 















































































   56...60.........70.........80.........90..... ....100.........110.........120.........130....
 
   102.......110.........120.........130. ........140
Predicted Secondary structure 











..



Query SS confidence 





























. .








Query Sequence  HFDLVICGNHNHSFFSRASCSAKRVIASSE. . VDVLLVPLT
Query Conservation    



 
         


    

    .. 




   
Alig confidence 





























..








Template Conservation   
  
                
   
               
Template Sequence  GARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGS
Template Known Secondary structure  T
S


STT
SS


S
Template Predicted Secondary structure 













Template SS confidence 








































   135....140.........150.........160.........170.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions