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Job Description | P46888 | Confidence | 34.33% | Date | Thu Jan 5 12:04:36 GMT 2012 |
Rank | 66 | Aligned Residues | 118 |
% Identity | 9% | Template | c2j4dA_ |
PDB info |
PDB header:dna-binding protein | Chain: A: PDB Molecule:cryptochrome dash; |
PDBTitle: cryptochrome 3 from arabidopsis thaliana
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Resolution | 1.9 Å |
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22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
K | A | V | S | I | A | R | P | V | K | G | H | I | S | L | I | T | L | A | S | D | P | E | M | Y | N | Q | L | A | A | P | M | L | E | D | L | R | S | V | M | H | E | E | T | Q | S | F | L | D | K | L | I | Q | D | A | G | Y | P | V | D | K | T | F | I | A | Y | G | E | L | S | E | H | I | L | E | V | C | H | K | H |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
D | A | L | Y | K | A | W | S | S | S | D | T | I | L | P | V | Y | C | L | D | P | R | L | F | H | T | T | H | F | F | N | F | P | K | T | G | A | L | R | G | . |
G | F | L | M | E | C | L | V | D | L | R | K | N | L | M | K | R | G | L | N | L | L | I | R | S | G | K | P | E | E | I | L | P | S | L | A | K | D | F |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
56 | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | |
. | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |
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102 | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | |
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. | . | . | . | . | . | . | . | 140 |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
H | F | D | L | V | I | C | G | N | H | N | H | S | F | F | S | R | A | S | C | S | A | K | R | V | I | A | S | S | E | . |
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V | D | V | L | L | V | P | L | T |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
G | A | R | T | V | F | A | H | K | E | T | C | S | E | E | V | D | V | E | R | L | V | N | Q | G | L | K | R | V | G | N | S | T | K | L | E | L | I | W | G | S |
Template Known Secondary structure |   |
T |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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135 | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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