Job Description P46888 Confidence 28.98% Date Thu Jan 5 12:04:36 GMT 2012 Rank 76 Aligned Residues 112 % Identity 13% Template c1u3cA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome 1 apoprotein; PDBTitle: crystal structure of the phr domain of cryptochrome 1 from2 arabidopsis thaliana Resolution 2.60 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		Q	L	L	A	K	A	V	S	I	A	R	P	V	K	G	H	I	S	L	I	T	L	A	S	D	P	E	M	Y	N	Q	L	A	A	P	M	L	E	D	L	R	S	V	M	H	E	E	T	Q	S	F	L	D	K	L	I	Q	D	A	G	Y	P	V	D	K	T	F	I	A	Y	G	.	E	L	S	E	H	I	L	E
Query Conservation																																																																									.
Alig confidence												.	.	.	.	.																																								.	.	.	.	.	.	.											.
Template Conservation												.	.	.	.	.																																								.	.	.	.	.	.	.
Template Sequence		P	A	L	A	A	A	V	R	A	G	.	.	.	.	.	P	V	I	A	L	F	V	W	A	P	E	E	E	G	H	Y	H	P	G	R	V	S	R	W	W	L	K	N	S	L	A	Q	L	D	S	S	L	R	S	.	.	.	.	.	.	.	L	G	T	C	L	I	T	K	R	S	T	D	S	V	A	S	L	L	D
Template Known Secondary structure											S	.	.	.	.	.										G	G	G	G	T	T																									.	.	.	.	.	.	.	T	T									S
Template Predicted Secondary structure												.	.	.	.	.																																								.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.								.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	H	K	H	H	F	D	L	V	I	C	G	N	H	N	H	S	F	F	S	R	A	S	C	S	A	K	R	V	I	A	S	S	E	V	D	V	L	L	V	P	L	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	K	S	T	G	A	S	Q	I	F	F	N	H	L	Y	D	P	L	S	L	V	R	D	H	R	A	K	D	V	L	T	A	Q	G	I	A	V	R	S	F	N	A	D	L
Template Known Secondary structure							T											S																T	T	T									S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions