Email l.a.kelley@imperial.ac.uk Description P52132 Date Thu Jan 5 12:05:37 GMT 2012 Unique Job ID 12f33cbd866485f6

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2f9jP_ 32.7 50 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 2 c3agjD_ 21.7 18 PDB header:translation/hydrolase Chain: D: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 3 c3agjB_ 21.7 18 PDB header:translation/hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 4 d2qi2a1 16.5 25 Fold:Sm-like fold Superfamily:Dom34/Pelota N-terminal domain-like Family:Dom34/Pelota N-terminal domain-like 5 c3lydA_ 14.3 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative uncharacterized protein from jonesia2 denitrificans 6 d2vgna1 13.4 31 Fold:Sm-like fold Superfamily:Dom34/Pelota N-terminal domain-like Family:Dom34/Pelota N-terminal domain-like 7 c2qi2A_ 12.6 21 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein pelota related protein; PDBTitle: crystal structure of the thermoplasma acidophilum pelota2 protein 8 c3obyB_ 11.2 29 PDB header:hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeoglobus fulgidus pelota reveals inter-2 domain structural plasticity 9 d1w6ga2 10.5 17 Fold:Cystatin-like Superfamily:Amine oxidase N-terminal region Family:Amine oxidase N-terminal region 10 c3obwA_ 9.9 21 PDB header:hydrolase Chain: A: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of two archaeal pelotas reveal inter-domain2 structural plasticity 11 c2zkrx_ 9.3 56 PDB header:ribosomal protein/rna Chain: X: PDB Molecule:rna helices; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 12 d1xl7a2 9.3 15 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 13 c3jywW_ 9.0 44 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l31(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 14 c3kztB_ 8.9 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_812423.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution 15 c3lg8B_ 8.7 25 PDB header:hydrolase Chain: B: PDB Molecule:a-type atp synthase subunit e; PDBTitle: crystal structure of the c-terminal part of subunit e (e101-206) from2 methanocaldococcus jannaschii of a1ao atp synthase 16 c4a1eW_ 8.5 44 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l31; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 17 c2j376_ 8.4 67 PDB header:ribosome Chain: 6: PDB Molecule:ribosomal protein l31; PDBTitle: model of mammalian srp bound to 80s rncs 18 d1q7ea_ 8.1 24 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF) 19 c2fipA_ 7.8 30 PDB header:transcription Chain: A: PDB Molecule:late genes activator; PDBTitle: phage phi29 transcription regulator p4 20 d1vqox1 7.8 44 Fold:Ribosomal protein L31e Superfamily:Ribosomal protein L31e Family:Ribosomal protein L31e 21 d1u5tb1 not modelled 7.7 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 22 d1xhmb1 not modelled 7.6 14 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 23 c3mcaB_ not modelled 7.5 38 PDB header:translation regulation/hydrolase Chain: B: PDB Molecule:protein dom34; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay 24 c1xhmB_ not modelled 7.5 14 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein g(i)/g(s) PDBTitle: the crystal structure of a biologically active peptide2 (sigk) bound to a g protein beta:gamma heterodimer 25 c3hogA_ not modelled 7.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [cu-zn], chloroplastic; PDBTitle: metal-free tomato chloroplast superoxide dismutase 26 c3hxxA_ not modelled 7.4 21 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp 27 c1yfsB_ not modelled 7.3 17 PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine 28 d1riqa2 not modelled 7.2 21 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 29 c2cv8A_ not modelled 6.8 20 PDB header:hydrolase Chain: A: PDB Molecule:trna-splicing endonuclease; PDBTitle: crystal structure of trna-intron endonuclease from2 sulfolobus tokodaii 30 c3m9vA_ not modelled 6.5 21 PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent oxidoreductase; PDBTitle: x-ray structure of a kijd3 in complex with dtdp 31 d1whza_ not modelled 6.4 21 Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:YcfA-like 32 c1wqeA_ not modelled 6.3 46 PDB header:toxin Chain: A: PDB Molecule:omtx3; PDBTitle: an unusual fold for potassium channel blockers: nmr2 structure of three toxins from the scorpion opisthacanthus3 madagascariensis 33 c3nbmA_ not modelled 6.1 10 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 34 c1e2vB_ not modelled 6.0 67 PDB header:electron transport proteins Chain: B: PDB Molecule:cytochrome f; PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii 35 d1ukua_ not modelled 5.9 35 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 36 d1vf5c1 not modelled 5.9 67 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 37 c1s1iW_ not modelled 5.8 44 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l31; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 38 d1ci3m1 not modelled 5.8 67 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 39 d1e2wa1 not modelled 5.8 67 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 40 d1gg2g_ not modelled 5.8 16 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 41 c3phfX_ not modelled 5.7 15 PDB header:viral protein Chain: X: PDB Molecule:envelope glycoprotein l; PDBTitle: crystal structure of the epstein-barr virus gh and gl complex 42 d1vhfa_ not modelled 5.6 24 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 43 d1hcza1 not modelled 5.5 67 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 44 d2zfha1 not modelled 5.4 35 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 45 c1xk8A_ not modelled 5.4 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:divalent cation tolerant protein cuta; PDBTitle: divalent cation tolerant protein cuta from homo sapiens2 o60888 46 d1y1pa1 not modelled 5.4 8 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 47 d1vkra_ not modelled 5.4 22 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 48 c1vkrA_ not modelled 5.4 22 PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii 49 c2ezvA_ not modelled 5.3 18 PDB header:hydrolase/dna Chain: A: PDB Molecule:type ii restriction enzyme sfii; PDBTitle: crystal structure of tetrameric restriction endonuclease2 sfii bound to cognate dna. 50 d1kx5b_ not modelled 5.2 19 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones