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Job DescriptionP0A6F5
Confidence100.00%DateWed Jan 25 15:20:15 GMT 2012
Rank6Aligned Residues481
% Identity20%Templatec3p9ei_
PDB info PDB header:chaperoneChain: I: PDB Molecule: PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN
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Template Sequence  GGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQ. . . . HPAGKILVELAQQQD
Template Known Secondary structure  S
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   1016...1020.........1030.........1040.........1050.........1060.........1070...... ...1080.........1090.
 
   83......90.........100.........110.........120.........130....... ..140.........150.....
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Query Sequence  DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP. CSDSKAIAQVGTISANSD. . . . . .
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Template Sequence  REIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTKETLINIAKTSMSSKIIGADS
Template Known Secondary structure  TSS
TTT

TGGGS


TTTTSSSGGGTT
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   1092.......1100.........1110.........1120.........1130.........1140.........1150.........1160.........1170.
 
   156...160.........170. ........180.........190.........200......... 210.........220..
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Query Sequence  ETVGKLIAEAMDKVGK. . . . . . . . . . . EGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPE. . TGAVELESPFILL
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Template Sequence  DFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQK
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SSS


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   1174.....1180.........1190.........1200.........1210.........1220.........1230.........1240.........1250...
 
   223......230 .........240.........250.........260.........270.........280.....
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Query Sequence  ADKKISNI. . . . . . . . . . . . . . . . . REMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR
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Template Sequence  ARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRC. . . . . . . . . . . K
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   1254.....1260.........1270.........1280.........1290.........1300.........1310.........1320. .
 
   286...290.........300.........310... ......320.........330.........340.........350.........360.
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Query Sequence  KAMLQDIATLTGGTVISEEIGMELEKAT. . . . LEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD
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Template Sequence  KEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKH. . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SS


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   1323......1330.........1340.........1350.........1360.........1370.........1380
 
   362.......370.........380.........390.........400.........410 .........420.........430.. .......
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Query Sequence  REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG. VVAGGGVALIRVASKLADLRGQ. NEDQNVG
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Template Sequence  . . . . . . . . . . . . . SSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLA
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S
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   1381........1390.........1400.........1410.........1420.........1430.........1440.......
 
   440.........450.........460.........470 .........480.........490.........500.......
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Query Sequence  IKVALRAMEAPLRQIVLNCGEEPSVVANTVK. . . . . . . . . . . . GGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYA
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Template Sequence  IAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSA
Template Known Secondary structure  TSSS

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   1448.1450.........1460.........1470.........1480.........1490.........1500.........1510.........1520.......
 
   508.510.........520.........530...
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Query Sequence  ASVAGLMITTECMVTDLPKNDAADLG
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Template Sequence  LEACVAILRIDTMITVDPEPPKEDPH
Template Known Secondary structure  T












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   1532.......1540.........1550.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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