Job Description P0A6F5 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 17 Aligned Residues 469 % Identity 20% Template c3iygQ_ PDB info PDB header:chaperone Chain: Q: PDB Molecule:t-complex protein 1 subunit theta; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map Resolution 4.00 Å

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		3	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		A	K	D	V	K	F	G	.	N	D	A	R	V	K	M	L	R	G	V	N	V	L	A	D	A	V	K	V	T	L	G	P	K	G	R	N	V	V	L	D	K	S	F	G	A	P	T	I	T	K	D	G	V	S	V	A	R	E	I	E	L	E	D	K	F	E	N	M	G	A	Q	M	V	K	E	V	A	S	K	A
Query Conservation									.
Alig confidence									.																																																							.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		G	A	K	H	F	S	G	L	E	E	A	V	Y	R	N	I	Q	A	C	K	E	L	A	Q	T	T	R	T	A	Y	G	P	N	G	M	N	K	M	V	I	N	H	L	E	K	L	F	V	T	N	D	A	A	T	I	L	R	E	L	E	V	Q	.	.	.	.	H	P	A	A	K	M	I	V	M	A	S	H	M	Q
Template Known Secondary structure									T	T																				S		S	T	T									T	T	T								S						T	S			S	.	.	.	.	S	S
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.																			.	.
Query SS confidence																																																										.	.	.	.																			.	.
Query Sequence		N	D	A	A	G	D	G	T	T	T	A	T	V	L	A	Q	A	I	I	T	E	G	L	K	A	V	A	A	G	M	N	P	M	D	L	K	R	G	I	D	K	A	V	T	A	A	V	E	E	L	K	A	L	S	V	P	.	.	.	.	C	S	D	S	K	A	I	A	Q	V	G	T	I	S	A	N	S	D	.	.
Query Conservation																																																										.	.	.	.																			.	.
Alig confidence																																																										.	.	.	.																			.	.
Template Conservation
Template Sequence		E	Q	E	V	G	D	G	T	N	F	V	L	V	F	A	G	A	L	L	E	L	A	E	E	L	L	R	L	G	L	S	V	S	E	V	I	E	G	Y	E	I	A	C	K	K	A	H	E	I	L	P	D	L	V	C	C	S	A	K	N	L	R	D	V	D	E	V	S	S	L	L	H	T	S	V	M	S	K	Q	Y
Template Known Secondary structure					S		S		S																			T	T	S	S																							T		B		S		S	S		T	T	T													T		S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
					156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.								.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure		.	.	.																			.	.	.	.	.	.	.
Query SS confidence		.	.	.																			.	.	.	.	.	.	.
Query Sequence		.	.	.	E	T	V	G	K	L	I	A	E	A	M	D	K	V	G	K	E	G	.	.	.	.	.	.	.	V	I	T	V	E	D	G	T	G	L	Q	D	E	L	D	V	V	E	G	M	Q	F	D	R	G	Y	L	S	P	Y	F	I	N	K	P	E	T	G	A	V	E	L	E	S	P	F	I	L	L	A	D	K
Query Conservation		.	.	.																			.	.	.	.	.	.	.
Alig confidence		.	.	.																			.	.	.	.	.	.	.																													.	.
Template Conservation																																																										.	.
Template Sequence		G	N	E	V	F	L	A	K	L	I	A	Q	A	C	V	S	I	F	P	D	S	G	H	F	N	V	D	N	I	R	V	C	K	I	L	G	S	G	V	H	S	S	S	V	L	H	G	M	V	F	K	K	E	T	E	G	.	.	D	V	T	S	V	K	D	A	K	I	A	V	Y	S	C	P	F	D	G	M	I	T
Template Known Secondary structure		S	S																S		T	T	S				G	G	G	G							S	S		S	S	B					S	S							B		S	.	.	S					S	S							S	S			S	S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		226	.	.	.	230																		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	S	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	M	L	P	V	L	E	A	V	A	K	A	G	K	P	L	L	I	I	A	E	D	V	E	G	E	A	L	A	T	L	V	V	N	T	M	R	G	I	V	K	V	A	A	V	K	A	P	G	F	G	D	R	R	K	A	M
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	K	G	T	V	L	I	K	S	A	E	E	L	M	N	F	S	K	G	E	E	N	L	M	D	A	Q	V	K	A	I	A	D	T	G	A	N	V	V	V	T	G	G	R	V	A	D	M	A	L	H	Y	A	N	K	Y	N	I	M	L	V	R	L	N	.	.	.	.	.	.	.	.	.	.	.	S	K	W	D
Template Known Secondary structure		S	S	S						S																							T	T	S	S	S	S	S					S	S				T								T	T	T						S		.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300												.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	D	I	A	T	L	T	G	G	T	V	I	S	E	E	I	G	M	E	L	E	K	A	T	L	E	D	L	G	Q	A	K	R	V	V	I	N	K	D	T	T	T	I	I	D	G	V	G	E	E	A	A	I	Q	G	R	V	A	Q	I	R	Q	Q	I	E	E	A	T	S	D	Y	D	R	E	K	L	Q	E	R
Query Conservation
Alig confidence																.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	R	L	C	K	T	V	G	A	T	A	L	P	.	.	.	.	.	R	L	N	P	P	V	L	E	E	M	G	H	C	D	S	V	Y	L	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	D	T	Q	V	V	V	F	K
Template Known Secondary structure									S					G	G	.	.	.	.	.	G		S			S	S	S	S					S		B					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T						B
Template Predicted Secondary structure																.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.						.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.																																.	340	.	.	.	.	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure																																												.																							.
Query SS confidence																																												.																							.
Query Sequence		V	A	K	L	A	G	G	V	A	V	I	K	V	G	A	A	T	E	V	E	M	K	E	K	K	A	R	V	E	D	A	L	H	A	T	R	A	A	V	E	E	G	.	V	V	A	G	G	G	V	A	L	I	R	V	A	S	K	L	A	D	L	R	G	Q	.	N	E	D	Q	N	V	G	I	K	V	A	L	R	A
Query Conservation																																												.																							.
Alig confidence																																												.																							.
Template Conservation
Template Sequence		H	E	K	E	D	G	A	I	S	T	I	V	L	R	G	S	T	D	N	L	M	D	D	I	E	R	A	V	D	D	G	V	N	T	F	K	V	L	T	R	D	K	R	L	V	P	G	G	G	A	T	E	I	E	L	A	K	Q	I	T	S	Y	G	E	T	C	P	G	L	E	Q	Y	A	I	K	K	F	A	E	A
Template Known Secondary structure		S		S	S	S	S								B		S	S																					T	T	S	S			B		B		T	T																T	S		T	T									T
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470							.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure																										.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.
Query Sequence		M	E	A	P	L	R	Q	I	V	L	N	C	G	E	E	P	S	V	V	A	N	T	V	K	.	.	.	.	.	.	G	G	D	G	N	Y	G	Y	N	A	A	T	E	E	Y	G	N	M	I	D	M	G	I	L	D	P	T	K	V	T	R	S	A	L	Q	Y	A	A	S	V	A	G	L	M	I	T	T	E	C	M
Query Conservation																										.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	A	I	P	R	A	L	A	E	N	S	G	V	K	A	N	E	V	I	S	K	L	Y	A	V	H	Q	E	G	N	K	N	V	G	L	D	I	E	A	E	V	P	A	V	K	D	M	L	E	A	G	V	L	D	T	Y	L	G	K	Y	W	A	I	K	L	A	T	N	A	A	V	T	V	L	R	V	D	Q	I
Template Known Secondary structure					T	T	T	T	T	S	G	G	G	S	S															T	T		S	S					T	T	T	T	S	S	S	S	S		T	T	T	T	T		B		T	T	T																		T
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		521	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	M	A	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		509	510	.	.