Job Description P0A6F5 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 24 Aligned Residues 467 % Identity 23% Template c3iygH_ PDB info PDB header:chaperone Chain: H: PDB Molecule:t-complex protein 1 subunit eta; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map Resolution 4.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	D	V	K	F	G	N	D	A	R	V	K	M	L	R	G	V	N	V	L	A	D	A	V	K	V	T	L	G	P	K	G	R	N	V	V	L	D	K	S	F	G	A	P	T	I	T	K	D	G	V	S	V	A	R	E	I	E	L	E	D	K	F	E	N	M	G	A	Q	M	V	K	E	V	A	S	K	A	N
Query Conservation
Alig confidence																																																															.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence		G	T	D	S	S	Q	G	I	P	Q	L	V	S	N	I	S	A	C	Q	V	I	A	E	A	V	R	T	T	L	G	P	R	G	M	D	K	L	I	V	D	G	R	G	K	A	T	I	S	N	D	G	A	T	I	L	K	L	L	D	V	V	.	.	.	.	H	P	A	A	K	T	L	V	D	I	A	K	S	Q	D
Template Known Secondary structure		T						S	S																				S	S	S	S			S							S	S	S							T	T	T	T	T	T	T	T	S			S	.	.	.	.		T	T
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.							.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.													.
Query SS confidence																																																															.	.	.	.	.	.													.
Query Sequence		D	A	A	G	D	G	T	T	T	A	T	V	L	A	Q	A	I	I	T	E	G	L	K	A	V	A	A	G	M	N	P	M	D	L	K	R	G	I	D	K	A	V	T	A	A	V	E	E	L	K	A	L	S	V	P	C	S	D	S	K	A	.	.	.	.	.	.	I	A	Q	V	G	T	I	S	A	N	S	D	.
Query Conservation																																																															.	.	.	.	.	.													.
Alig confidence																																																															.	.	.	.	.	.													.
Template Conservation
Template Sequence		A	E	V	G	D	G	T	T	S	V	T	L	L	A	A	E	F	L	K	Q	V	K	P	Y	V	E	E	G	L	H	P	Q	I	I	I	R	A	F	R	T	A	T	Q	L	A	V	N	K	I	K	E	I	A	V	T	V	K	K	E	D	K	V	E	Q	R	K	L	L	E	K	C	A	M	T	A	L	S	S	K	L
Template Known Secondary structure						T	T														T	T	S	S	S	T	T	S	S			T																				T	T						S	S																		T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
							156	.	.	.	160	.	.	.	.	.	.	.	.	.					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.															.	.	.	.
Query SS confidence		.	.	.	.	.															.	.	.	.
Query Sequence		.	.	.	.	.	E	T	V	G	K	L	I	A	E	A	M	D	K	V	.	.	.	.	G	K	E	G	V	I	T	V	E	D	G	T	G	L	Q	D	E	L	D	V	V	E	G	M	Q	F	D	R	G	Y	L	S	P	Y	F	I	N	K	P	E	T	G	A	V	E	L	E	S	P	F	I	L	L	A	D	K	K
Query Conservation		.	.	.	.	.															.	.	.	.
Alig confidence		.	.	.	.	.															.	.	.	.																																										.	.	.	.
Template Conservation																																																																		.	.	.	.
Template Sequence		I	S	Q	Q	K	A	F	F	A	K	M	V	V	D	A	V	M	M	L	D	D	L	L	Q	L	K	M	I	G	I	K	K	V	Q	G	G	A	L	E	E	S	Q	L	V	A	G	V	A	F	K	K	T	F	S	Y	A	G	F	E	M	Q	P	K	K	.	.	.	.	Y	H	N	P	M	I	A	L	L	N	V	E
Template Known Secondary structure		G	G																		S	S	S						T	T	S									T	T	S							S	S								S		T	T	S		S		.	.	.	.			S						B	S	S
Template Predicted Secondary structure																																																																		.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.	.	.
		227	.	.	230	.																									.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	N	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	M	L	P	V	L	E	A	V	A	K	A	G	K	P	L	L	I	I	A	E	D	V	E	G	E	A	L	A	T	L	V	V	N	T	M	R	G	I	V	K	V	A	A	V	K	A	P	G	F	G
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		L	E	L	K	A	E	K	D	N	A	E	I	R	V	H	T	V	E	D	Y	Q	A	I	V	D	A	E	W	N	I	L	Y	D	K	L	E	K	I	H	H	S	G	A	K	V	V	L	S	K	L	P	I	G	D	V	A	T	Q	Y	F	A	D	R	D	M	F	C	A	G	R	V	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S						S	S							S		G	G	G	T																				T	T			S					S	S												S	S					B	S	S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	R	K	A	M	L	Q	D	I	A	T	L	T	G	G	T	V	I	S	E	E	I	G	M	E	L	E	K	A	T	L	E	D	L	G	Q	A	K	R	V	V	I	N	K	D	T	T	T	I	I	D	G	V	G	E	E	A	A	I	Q	G	R	V	A	Q	I	R	Q	Q	I	E	E	A	T	S	D	Y	D	R
Query Conservation
Alig confidence		.	.																												.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																												.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	P	E	E	D	L	K	R	T	M	M	A	C	G	G	S	I	Q	T	S	V	N	A	L	S	S	D	V	.	.	L	G	R	C	Q	V	F	E	E	T	Q	I	G	G	E	R	Y	N	F	F	T	G	C	P	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.		S										T	T				B	S		G	G	G			G	G	G	.	.					S								T	T								S		S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.																												.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440
Predicted Secondary structure																																																	.																								.
Query SS confidence																																																	.																								.
Query Sequence		E	K	L	Q	E	R	V	A	K	L	A	G	G	V	A	V	I	K	V	G	A	A	T	E	V	E	M	K	E	K	K	A	R	V	E	D	A	L	H	A	T	R	A	A	V	E	E	.	G	V	V	A	G	G	G	V	A	L	I	R	V	A	S	K	L	A	D	L	R	G	Q	.	N	E	D	Q	N	V	G	I
Query Conservation																																																	.																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																				.																								.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	K	T	C	T	I	I	L	R	G	G	A	E	Q	F	M	E	E	T	E	R	S	L	H	D	A	I	M	I	V	R	R	A	I	K	N	D	S	V	V	A	G	G	G	A	I	E	M	E	L	S	K	Y	L	R	D	Y	S	R	T	I	P	G	K	Q	Q	L	L	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	T									T	T	S																				T	T	S	S	S					T	T	T														T	S				T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470					.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		K	V	A	L	R	A	M	E	A	P	L	R	Q	I	V	L	N	C	G	E	E	P	S	V	V	A	N	T	V	K	.	.	.	.	G	G	D	G	N	Y	G	Y	N	A	A	T	E	E	Y	G	N	M	I	D	M	G	I	L	D	P	T	K	V	T	R	S	A	L	Q	Y	A	A	S	V	A	G	L	M	I	T
Query Conservation																																.	.	.	.
Alig confidence																																.	.	.	.
Template Conservation
Template Sequence		G	A	Y	A	K	A	L	E	I	I	P	R	Q	L	C	D	N	A	G	F	D	A	T	N	I	L	N	K	L	R	A	R	H	A	Q	G	G	M	W	Y	G	V	D	I	N	T	E	D	I	A	D	N	F	E	A	F	V	W	E	P	A	M	V	R	I	N	A	L	T	A	A	S	E	A	A	C	L	I	V	S
Template Known Secondary structure				S				G	G	G	T	T	T					T	T	T	S		T					T	T	T	T	S	S	T	T	T	T				S				S	T	T	S	S													S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
		517	.	.	520	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	C	M	V	T	D	L	P	K
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		V	D	E	T	I	K	.	N	P	R
Template Known Secondary structure								.
Template Predicted Secondary structure								.
Template SS confidence
		507	.	.	510	.	.		.	.	.