Job Description P0A6F5 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 4 Aligned Residues 471 % Identity 20% Template c3iygE_ PDB info PDB header:chaperone Chain: E: PDB Molecule:t-complex protein 1 subunit; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map Resolution 4.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	D	V	K	F	G	N	D	A	R	V	K	M	L	R	G	V	N	V	L	A	D	A	V	K	V	T	L	G	P	K	G	R	N	V	V	L	D	K	S	F	G	A	P	T	I	T	K	D	G	V	S	V	A	R	E	I	E	L	E	D	K	F	E	N	M	G	A	Q	M	V	K	E	V	A	S	K	A	N
Query Conservation
Alig confidence																																																															.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence		R	K	S	R	L	M	G	L	E	A	L	K	S	H	I	M	A	A	K	A	V	A	N	T	M	K	T	S	L	G	P	N	G	L	D	K	M	M	V	D	K	D	G	D	V	T	V	T	N	D	G	A	T	I	L	S	M	M	D	V	D	.	.	.	.	H	Q	I	A	K	L	M	V	E	L	S	K	S	Q	D
Template Known Secondary structure																													S	S	S	S	S									T	T															T	S				.	.	.	.	S
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.																		.	.	.
Query SS confidence																																																										.	.	.	.																		.	.	.
Query Sequence		D	A	A	G	D	G	T	T	T	A	T	V	L	A	Q	A	I	I	T	E	G	L	K	A	V	A	A	G	M	N	P	M	D	L	K	R	G	I	D	K	A	V	T	A	A	V	E	E	L	K	A	L	S	V	P	C	.	.	.	.	S	D	S	K	A	I	A	Q	V	G	T	I	S	A	N	S	D	.	.	.
Query Conservation																																																										.	.	.	.																		.	.	.
Alig confidence																																																										.	.	.	.																		.	.	.
Template Conservation
Template Sequence		D	E	I	G	D	G	T	T	G	V	V	V	L	A	G	A	L	L	E	E	A	E	Q	L	L	D	R	G	I	H	P	I	R	I	A	D	G	Y	E	Q	A	A	R	I	A	I	E	H	L	D	K	I	S	D	S	V	L	V	D	M	K	N	T	E	P	L	I	Q	T	A	K	T	T	L	G	S	K	V	V	N
Template Known Secondary structure						S	S	S																			T	T	T	S			T	T	S																		S					S	T	T											T	T	S	S	S	S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
					156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.									.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure		.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		.	.	.	E	T	V	G	K	L	I	A	E	A	M	D	K	V	G	K	E	G	.	.	.	.	.	.	.	.	V	I	T	V	E	D	G	T	G	L	Q	D	E	L	D	V	V	E	G	M	Q	F	D	R	G	Y	L	S	P	Y	F	I	N	K	P	E	T	G	A	V	E	L	E	S	P	F	I	L	L	A	D
Query Conservation		.	.	.																			.	.	.	.	.	.	.	.
Alig confidence		.	.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	C	H	R	Q	M	A	E	I	A	V	N	A	V	L	T	V	A	D	M	Q	R	R	D	V	D	F	E	L	I	K	V	E	G	K	V	G	G	R	L	E	D	T	K	L	I	K	G	V	I	V	D	K	D	F	S	H	P	Q	M	P	K	Q	V	E	D	A	K	I	A	I	L	T	C	P	F	E	P	P	K
Template Known Secondary structure															T	T			S	S	T	T	S	S	S	S		G	G	G							S	S	S	B	S	T	T					S	S		B		S				S	S	T	T	S		S			T	T	B					B	S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		225	.	.	.	.	230																		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	I	S	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	M	L	P	V	L	E	A	V	A	K	A	G	K	P	L	L	I	I	A	E	D	V	E	G	E	A	L	A	T	L	V	V	N	T	M	R	G	I	V	K	V	A	A	V	K	A	P	G	F	G	D	R	R	K	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	K	T	K	H	K	L	D	V	T	S	V	E	D	F	K	A	L	Q	K	Y	E	K	E	K	F	E	E	M	I	R	Q	I	K	E	T	G	A	N	L	A	V	C	Q	W	G	F	D	D	E	A	N	H	L	L	L	Q	N	D	L	P	A	V	R	W	V	.	.	.	.	.	.	.	.	.	.	.	G	G	P
Template Known Secondary structure		S	S			S						T	T	T																									T	T						S				S									T	T			B		S	S		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.												.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	Q	D	I	A	T	L	T	G	G	T	V	I	S	E	E	I	G	M	E	L	E	K	A	T	L	E	D	L	G	Q	A	K	R	V	V	I	N	K	D	T	T	T	I	I	D	G	V	G	E	E	A	A	I	Q	G	R	V	A	Q	I	R	Q	Q	I	E	E	A	T	S	D	Y	D	R	E	K	L	Q	E
Query Conservation
Alig confidence																	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	E	L	I	A	I	A	T	G	G	R	I	V	P	.	.	.	.	.	R	F	S	E	L	T	A	E	K	L	G	F	A	G	L	V	K	E	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	T	T	K	D	K	M	L	V
Template Known Secondary structure										S					B	S	.	.	.	.	.		S	T	T			G	G	G	B			B	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S	S
Template Predicted Secondary structure																	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.						.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.																															.	.	.	.	.	.	.	.	350	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure																																													.																							.
Query SS confidence																																													.																							.
Query Sequence		R	V	A	K	L	A	G	G	V	A	V	I	K	V	G	A	A	T	E	V	E	M	K	E	K	K	A	R	V	E	D	A	L	H	A	T	R	A	A	V	E	E	G	.	V	V	A	G	G	G	V	A	L	I	R	V	A	S	K	L	A	D	L	R	G	Q	.	N	E	D	Q	N	V	G	I	K	V	A	L	R
Query Conservation																																													.																							.
Alig confidence																																													.																							.
Template Conservation
Template Sequence		I	E	Q	C	K	N	S	R	A	V	T	I	F	I	R	G	G	N	K	M	I	I	E	E	A	K	R	S	L	H	D	A	L	C	V	I	R	N	L	I	R	D	N	R	V	V	Y	G	G	G	A	A	E	I	S	C	A	L	A	V	S	Q	E	A	D	K	C	P	T	L	E	Q	Y	A	M	R	A	F	A	D
Template Known Secondary structure				S		S			S	S							B	S	S																								T				B			S	S	S													G	G	G	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.						470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure																										.	.	.	.	.
Query SS confidence																										.	.	.	.	.
Query Sequence		A	M	E	A	P	L	R	Q	I	V	L	N	C	G	E	E	P	S	V	V	A	N	T	V	.	.	.	.	.	K	G	G	D	G	N	Y	G	Y	N	A	A	T	E	E	Y	G	N	M	I	D	M	G	I	L	D	P	T	K	V	T	R	S	A	L	Q	Y	A	A	S	V	A	G	L	M	I	T	T	E	C	M
Query Conservation																										.	.	.	.	.
Alig confidence																										.	.	.	.	.
Template Conservation
Template Sequence		A	L	E	V	I	P	M	A	L	A	E	N	S	G	M	N	P	I	Q	T	M	T	E	V	R	A	R	Q	V	K	E	V	N	P	A	L	G	I	D	C	L	H	K	G	T	N	D	M	K	H	Q	H	V	I	E	T	L	I	G	K	K	Q	Q	I	S	L	A	T	Q	M	V	R	M	I	L	K	I	D	D	I
Template Known Secondary structure		T	T	T									T	T	S	S															T	T	T		T	T					T	T	T		S								T			B		S																			T
Template Predicted Secondary structure
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
		521	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	K	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		517	.	.