Job Description P0A6F5 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 8 Aligned Residues 472 % Identity 22% Template c3iygD_ PDB info PDB header:chaperone Chain: D: PDB Molecule:t-complex protein 1 subunit delta; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map Resolution 4.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	K	D	V	K	F	G	N	D	A	R	V	K	M	L	R	G	V	N	V	L	A	D	A	V	K	V	T	L	G	P	K	G	R	N	V	V	L	D	K	S	F	G	A	P	T	I	T	K	D	G	V	S	V	A	R	E	I	E	L	E	D	K	F	E	N	M	G	A	Q	M	V	K	E	V	A	S	K	A
Query Conservation
Alig confidence																																																																.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		A	Y	Q	D	R	D	K	P	A	Q	I	R	F	S	N	I	S	A	A	K	A	V	A	D	A	I	R	T	S	L	G	P	K	G	M	D	K	M	I	Q	D	G	K	G	D	V	T	I	T	N	D	G	A	T	I	L	K	Q	M	Q	V	L	.	.	.	.	H	P	A	A	R	M	L	V	E	L	S	K	A	Q
Template Known Secondary structure		T	T				B		T	T																			G	G	G	S	S	S									S	S	S							S	S	S	S	T	T	T	S				S	.	.	.	.	S	S	S	S
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																											.	.																		.	.	.	.
Query SS confidence																																																											.	.																		.	.	.	.
Query Sequence		N	D	A	A	G	D	G	T	T	T	A	T	V	L	A	Q	A	I	I	T	E	G	L	K	A	V	A	A	G	M	N	P	M	D	L	K	R	G	I	D	K	A	V	T	A	A	V	E	E	L	K	A	L	S	V	P	C	.	.	S	D	S	K	A	I	A	Q	V	G	T	I	S	A	N	S	D	.	.	.	.
Query Conservation																																																											.	.																		.	.	.	.
Alig confidence																																																											.	.																		.	.	.	.
Template Conservation
Template Sequence		D	I	E	A	G	D	G	T	T	S	V	V	I	I	A	G	S	L	L	D	S	C	T	K	L	L	Q	K	G	I	H	P	T	I	I	S	E	S	F	Q	K	A	L	E	K	G	I	E	I	L	T	D	M	S	R	P	V	E	L	S	D	R	E	T	L	L	N	S	A	A	T	S	L	N	S	K	V	V	S	Q
Template Known Secondary structure						S	S	S	T																			T	T	S	S		S	S																				T						S	S															S	S	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
				156	.	.	.	160	.	.	.	.	.	.	.	.	.										170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure		.	.															.	.	.	.	.	.	.	.	.
Query SS confidence		.	.															.	.	.	.	.	.	.	.	.
Query Sequence		.	.	E	T	V	G	K	L	I	A	E	A	M	D	K	V	.	.	.	.	.	.	.	.	.	G	K	E	G	V	I	T	V	E	D	G	T	G	L	Q	D	E	L	D	V	V	E	G	M	Q	F	D	R	G	Y	L	S	P	Y	F	I	N	K	P	E	T	G	A	V	E	L	E	S	P	F	I	L	L	A	D
Query Conservation		.	.															.	.	.	.	.	.	.	.	.
Alig confidence		.	.															.	.	.	.	.	.	.	.	.																																						.
Template Conservation																																																																.
Template Sequence		Y	S	S	L	L	S	P	M	S	V	D	A	V	M	K	V	I	D	P	A	T	A	T	S	V	D	L	R	D	I	K	I	V	K	K	L	G	G	T	I	D	D	C	E	L	V	E	G	L	V	L	T	Q	K	V	A	N	S	G	I	T	R	.	V	E	K	A	K	I	G	L	I	Q	F	C	L	S	A	P	K
Template Known Secondary structure		S		S	T												T				S	S	S		S	S		S	T	T							S	S	S		G	G	G					S	S		B						S	S	S	S				.											S			S	S
Template Predicted Secondary structure																																																																.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		225	.	.	.	.																		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Query Sequence		K	K	I	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	E	M	L	P	V	L	E	A	V	A	K	A	G	K	P	L	L	I	I	A	E	D	V	.	.	.	.	.	E	G	E	A	L	A	T	L	V	V	N	T	M	R	G	I	V	K	V	A	A	V	K	A	P	G	F	G
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		T	D	M	D	N	Q	I	V	V	S	D	Y	V	Q	M	D	R	V	L	R	E	E	R	A	Y	I	L	N	L	V	K	Q	I	K	K	T	G	C	N	V	L	L	I	Q	K	S	I	L	R	D	A	L	S	D	L	A	L	H	F	L	N	K	M	K	I	M	V	V	K	D	I	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S	S						S	S																								T	S			S					S				S	T	T		T	T	T	T								T	T						S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	R	K	A	M	L	Q	D	I	A	T	L	T	G	G	T	V	I	S	E	E	I	G	M	E	L	E	K	A	T	L	E	D	L	G	Q	A	K	R	V	V	I	N	K	D	T	T	T	I	I	D	G	V	G	E	E	A	A	I	Q	G	R	V	A	Q	I	R	Q	Q	I	E	E	A	T	S	D	Y	D	R
Query Conservation
Alig confidence		.	.																			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	E	R	E	D	I	E	F	I	C	K	T	I	G	T	K	P	V	A	.	.	.	.	.	H	V	D	Q	F	T	A	D	M	L	G	S	A	E	L	A	E	E	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	G	S	G
Template Known Secondary structure		.	.												S	S					S	.	.	.	.	.	S	T	T	S			T	T	T	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S		S
Template Predicted Secondary structure		.	.																			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.						.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.																															.	.	.	.	350
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440
Predicted Secondary structure																																																		.																							.
Query SS confidence																																																		.																							.
Query Sequence		E	K	L	Q	E	R	V	A	K	L	A	G	G	V	A	V	I	K	V	G	A	A	T	E	V	E	M	K	E	K	K	A	R	V	E	D	A	L	H	A	T	R	A	A	V	E	E	G	.	V	V	A	G	G	G	V	A	L	I	R	V	A	S	K	L	A	D	L	R	G	Q	.	N	E	D	Q	N	V	G	I
Query Conservation																																																		.																							.
Alig confidence																																																		.																							.
Template Conservation
Template Sequence		K	L	I	K	I	T	G	C	A	S	P	G	K	T	V	T	I	V	V	R	G	S	N	K	L	V	I	E	E	A	E	R	S	I	H	D	A	L	C	V	I	R	C	L	V	K	K	R	A	L	I	A	G	G	G	A	P	E	I	E	L	A	L	R	L	T	E	Y	S	R	T	L	S	G	M	E	S	Y	C	I
Template Known Secondary structure		S							S		S		S	S									S	S	T	T																					S	S							S	S	S	S													T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470					.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		K	V	A	L	R	A	M	E	A	P	L	R	Q	I	V	L	N	C	G	E	E	P	S	V	V	A	N	T	V	K	.	.	.	.	G	G	D	G	N	Y	G	Y	N	A	A	T	E	E	Y	G	N	M	I	D	M	G	I	L	D	P	T	K	V	T	R	S	A	L	Q	Y	A	A	S	V	A	G	L	M	I	T
Query Conservation																																.	.	.	.
Alig confidence																																.	.	.	.
Template Conservation
Template Sequence		R	A	F	A	D	A	M	E	V	I	P	S	T	L	A	E	N	A	G	L	N	P	I	S	T	V	T	E	L	R	N	R	H	A	Q	G	E	K	T	T	G	I	N	V	R	K	G	G	I	S	N	I	L	E	E	L	V	V	Q	P	L	L	V	S	V	S	A	L	T	L	A	T	E	T	V	R	S	I	L	K
Template Known Secondary structure																	T	T	T	T															T	T			S	S					T	T	T		S				T	T	T	T	T				B																				T
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
		517	.	.	520	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	C	M	V	T	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	D	V	V	N	T	R
Template Known Secondary structure					B
Template Predicted Secondary structure
Template SS confidence
		511	.	.	.	.	.	.	.