Job Description P0A6F5 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 10 Aligned Residues 467 % Identity 21% Template c3iygA_ PDB info PDB header:chaperone Chain: A: PDB Molecule:t-complex protein 1 subunit alpha; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map Resolution 4.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	D	A	R	V	K	M	L	R	G	V	N	V	L	A	D	A	V	K	V	T	L	G	P	K	G	R	N	V	V	L	D	K	S	F	G	A	P	T	I	T	K	D	G	V	S	V	A	R	E	I	E	L	E	D	K	F	E	N	M	G	A	Q	M	V	K	E	V	A	S	K	A	N	D	A	A	G	D	G
Query Conservation
Alig confidence																																																									.	.	.	.
Template Conservation																																																									.	.	.	.
Template Sequence		G	E	A	I	R	S	Q	N	V	M	A	A	A	S	I	A	N	I	V	K	S	S	L	G	P	V	G	L	D	K	M	L	V	D	D	I	G	D	V	T	I	T	N	D	G	A	T	I	L	K	L	L	E	V	E	.	.	.	.	H	P	A	A	K	V	L	C	E	L	A	D	L	Q	D	K	E	V	G	D	G
Template Known Secondary structure		T	T																	T	T	S			S	T	T									S	S	S							S	T	T					S	S			S	.	.	.	.	S	T	T																	S	S
Template Predicted Secondary structure																																																									.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.							.	.	.	.
Predicted Secondary structure																																																				.	.	.																		.	.	.	.	.	.
Query SS confidence																																																				.	.	.																		.	.	.	.	.	.
Query Sequence		T	T	T	A	T	V	L	A	Q	A	I	I	T	E	G	L	K	A	V	A	A	G	M	N	P	M	D	L	K	R	G	I	D	K	A	V	T	A	A	V	E	E	L	K	A	L	S	V	P	C	.	.	.	S	D	S	K	A	I	A	Q	V	G	T	I	S	A	N	S	D	.	.	.	.	.	.	E	T	V	G
Query Conservation																																																				.	.	.																		.	.	.	.	.	.
Alig confidence																																																				.	.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	S	V	V	I	I	A	A	E	L	L	K	N	A	D	E	L	V	K	Q	K	I	H	P	T	S	V	I	S	G	Y	R	L	A	C	K	E	A	V	R	Y	I	S	E	N	L	I	I	N	T	D	E	L	G	R	D	C	L	I	N	A	A	K	T	S	M	S	S	K	V	I	G	I	N	G	D	F	F	A
Template Known Secondary structure																			T	T	T	T	T			T																						S						S	S														T	T	S				T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.												.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	I	A	E	A	M	D	K	V	G	K	E	G	.	.	.	.	.	.	.	.	.	.	.	V	I	T	V	E	D	G	T	G	L	Q	D	E	L	D	V	V	E	G	M	Q	F	D	R	G	Y	L	S	P	Y	F	I	N	K	P	E	T	G	A	V	E	L	E	S	P	F	I	L	L	A	D	K	K	I	S
Query Conservation																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	V	V	D	A	V	L	A	I	K	Y	T	D	I	R	G	Q	P	R	Y	P	V	N	S	I	N	V	L	K	A	H	G	R	S	Q	M	E	S	M	L	I	N	G	Y	A	L	N	C	V	V	G	S	Q	G	M	P	K	R	I	V	N	A	K	I	A	C	L	D	F	S	L	Q	K	T	K	M	K	L	G
Template Known Secondary structure											T					T	T	T	S		S			T	T	S									S	S	T	T					B	S	S								S	S	S	S	S		S											S	S		S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		229																		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	E	M	L	P	V	L	E	A	V	A	K	A	G	K	P	L	L	I	I	A	E	D	V	E	G	E	A	L	A	T	L	V	V	N	T	M	R	G	I	V	K	V	A	A	V	K	A	P	G	F	G	D	R	R	K	A	M	L	Q	D
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Q	V	V	I	T	D	P	E	K	L	D	Q	I	R	Q	R	E	S	D	I	T	K	E	R	I	Q	K	I	L	A	T	G	A	N	V	I	L	T	T	G	G	I	D	D	M	C	L	K	Y	F	V	E	A	G	A	M	A	V	R	R	V	.	.	.	.	.	.	.	.	.	.	.	L	K	R	D	L	K	R
Template Known Secondary structure								S	T	T																						T	T	T							S	S													T	S						S		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.												.	.	.	.	310	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.				.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																					.														.	.	.
Query SS confidence																					.														.	.	.
Query Sequence		I	A	T	L	T	G	G	T	V	I	S	E	E	I	G	M	E	L	E	.	K	A	T	L	E	D	L	G	Q	A	K	R	V	.	.	.	V	I	N	K	D	T	T	T	I	I	D	G	V	G	E	E	A	A	I	Q	G	R	V	A	Q	I	R	Q	Q	I	E	E	A	T	S	D	Y	D	R	E	K	L	Q	E
Query Conservation																					.														.	.	.
Alig confidence																					.														.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	K	A	S	G	A	T	V	L	S	T	L	A	N	L	E	G	E	E	T	F	E	A	S	M	L	G	Q	A	E	E	V	V	Q	E	R	I	C	D	D	E	L	I	L	I	K	N	T	K	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S	S					S	S	S	G	G	G	S	S			S	S	S			T	T											S	S	S										S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure																																													.																							.
Query SS confidence																																													.																							.
Query Sequence		R	V	A	K	L	A	G	G	V	A	V	I	K	V	G	A	A	T	E	V	E	M	K	E	K	K	A	R	V	E	D	A	L	H	A	T	R	A	A	V	E	E	G	.	V	V	A	G	G	G	V	A	L	I	R	V	A	S	K	L	A	D	L	R	G	Q	.	N	E	D	Q	N	V	G	I	K	V	A	L	R
Query Conservation																																													.																							.
Alig confidence		.	.	.	.	.	.	.																																					.																							.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	T	S	A	S	V	I	L	R	G	A	N	D	F	M	C	D	E	M	E	R	S	L	H	D	A	L	C	V	V	K	R	V	L	E	S	K	S	V	V	P	G	G	G	A	V	E	A	A	L	S	I	Y	L	E	N	Y	A	T	S	M	G	S	R	E	Q	L	A	I	A	E	F	A	R
Template Known Secondary structure		.	.	.	.	.	.	.	T	T								S	S	S	S																				T	T							S	S	S	T														T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.													.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	E	A	P	L	R	Q	I	V	L	N	C	G	E	E	P	S	V	V	A	N	T	V	K	G	.	.	.	.	.	.	.	.	.	.	.	.	G	D	G	N	Y	G	Y	N	A	A	T	E	E	Y	G	N	M	I	D	M	G	I	L	D	P	T	K	V	T	R	S	A	L	Q	Y	A	A	S	V	A	G	L
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	L	V	I	P	N	T	L	A	V	N	A	A	Q	D	S	T	D	L	V	A	K	L	R	A	F	H	N	E	A	Q	V	N	P	E	R	K	N	L	K	W	I	G	L	D	L	V	N	G	K	P	R	D	N	K	Q	A	G	V	F	E	P	T	I	V	K	V	K	S	L	K	F	A	T	E	A	A	I	T
Template Known Secondary structure				T										S	S			G	G	G											S	S	S			S	S	S										T	T	T	S	S								T
Template Predicted Secondary structure
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
		514	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	T	T	E	C	M	V	T	D	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	R	I	D	D	L	I	K	L	H	P
Template Known Secondary structure											S
Template Predicted Secondary structure
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.