Job Description P0A6F5 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 28 Aligned Residues 374 % Identity 24% Template c3aq1B_ PDB info PDB header:chaperone Chain: B: PDB Molecule:thermosome subunit; PDBTitle: open state monomer of a group ii chaperonin from methanococcoides2 burtonii Resolution 2.75 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.							.
Predicted Secondary structure																																																								.	.																		.	.	.	.	.	.
Query SS confidence																																																								.	.																		.	.	.	.	.	.
Query Sequence		A	G	D	G	T	T	T	A	T	V	L	A	Q	A	I	I	T	E	G	L	K	A	V	A	A	G	M	N	P	M	D	L	K	R	G	I	D	K	A	V	T	A	A	V	E	E	L	K	A	L	S	V	P	C	.	.	S	D	S	K	A	I	A	Q	V	G	T	I	S	A	N	S	D	.	.	.	.	.	.	E
Query Conservation																																																								.	.																		.	.	.	.	.	.
Alig confidence																																																								.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	D	G	T	T	T	A	A	V	L	S	G	E	L	L	S	K	A	E	E	L	I	M	K	G	V	H	S	T	I	I	S	E	G	Y	R	H	A	A	E	K	C	R	E	I	L	E	T	I	T	I	A	I	S	P	D	D	E	A	A	L	I	K	I	A	G	T	A	I	T	G	K	G	A	E	A	Y	K	E
Template Known Secondary structure																									T	T	T																														T	T											T	T			S	S	S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.												.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	G	K	L	I	A	E	A	M	D	K	V	G	K	E	.	.	.	.	.	.	.	.	.	.	.	G	V	I	T	V	E	D	G	T	G	L	Q	D	E	L	D	V	V	E	G	M	Q	F	D	R	G	Y	L	S	P	Y	F	I	N	K	P	E	T	G	A	V	E	L	E	S	P	F	I	L	L	A	D	K
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.
Template Sequence		K	L	S	A	L	T	V	K	A	V	R	S	I	V	E	E	E	E	D	G	L	K	V	N	V	L	E	N	I	K	I	E	K	R	A	G	G	S	I	D	D	S	E	L	I	D	G	L	V	I	D	K	E	R	S	H	P	N	M	P	E	K	.	.	.	.	.	.	.	V	E	N	A	K	I	L	L	L	S	C
Template Known Secondary structure												T	T	S					S	S	S																S	S		G	G	G					S					S				S	S	T	T	S		S		.	.	.	.	.	.	.										S	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.								.	.	.	.	.	.	.	230	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	S	N	I	R	E	M	L	P	V	L	E	A	V	A	K	A	G	K	P	L	L	I	I	A	E	D	V	E	G	E	A	L	A	T	L	V	V	N	T	M	R	G	I	V	K	V	A	A	V	K	A	P	G	F	G	D	R	R	K	A	M	L	Q	D	I	A	T	L	T	G	G	T	V	I	S	E	E	I
Query Conservation
Alig confidence						.																																												.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation						.																																												.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		P	V	E	F	.	K	M	M	R	E	M	A	E	K	V	I	A	S	G	A	N	V	V	F	C	Q	K	G	I	D	D	M	A	Q	Y	Y	I	E	K	A	G	I	Y	A	V	R	R	V	.	.	.	.	.	.	.	.	.	.	.	K	K	S	D	L	K	R	L	S	K	V	T	G	A	T	I	I	Q	.	.	.
Template Known Secondary structure			B			.												T	T			S					S	S		B											T	T						S		.	.	.	.	.	.	.	.	.	.	.																	B	S	.	.	.
Template Predicted Secondary structure						.																																												.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		234	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280												.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.				.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		G	M	E	L	E	K	A	T	L	E	D	L	G	Q	A	K	R	V	V	.	.	.	I	N	K	D	T	T	T	I	I	D	G	V	G	E	E	A	A	I	Q	G	R	V	A	Q	I	R	Q	Q	I	E	E	A	T	S	D	Y	D	R	E	K	L	Q	E	R	V	A	K	L	A	G	G	V	A	V	I	K	V	G
Query Conservation																					.	.	.
Alig confidence		.	.																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	D	L	D	Q	I	T	T	E	D	V	G	T	A	G	L	V	E	E	K	E	V	R	G	G	K	M	T	Y	V	T	G	C	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	K	A	V	T	V	L	L	H
Template Known Secondary structure		.	.		T	T				S	T	T													S	S	S									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure		.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.																																				.	.	.	360	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																														.																							.
Query SS confidence																														.																							.
Query Sequence		A	A	T	E	V	E	M	K	E	K	K	A	R	V	E	D	A	L	H	A	T	R	A	A	V	E	E	G	.	V	V	A	G	G	G	V	A	L	I	R	V	A	S	K	L	A	D	L	R	G	Q	.	N	E	D	Q	N	V	G	I	K	V	A	L	R	A	M	E	A	P	L	R	Q	I	V	L	N	C	G	E
Query Conservation																														.																							.
Alig confidence																														.																							.
Template Conservation
Template Sequence		G	G	T	E	H	V	V	D	S	L	D	H	A	L	N	D	A	L	H	V	V	G	V	V	I	E	D	G	K	V	V	V	G	G	G	S	S	E	V	E	L	S	L	R	L	S	E	Y	A	S	T	L	K	G	R	E	Q	L	A	V	S	K	F	A	E	A	L	E	V	I	P	V	A	L	A	E	N	A	G	L
Template Known Secondary structure			S	S																									S					T	T	T																T			S													T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470					.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		E	P	S	V	V	A	N	T	V	K	.	.	.	.	G	G	D	G	N	Y	G	Y	N	A	A	T	E	E	Y	G	N	M	I	D	M	G	I	L	D	P	T	K	V	T	R	S	A	L	Q	Y	A	A	S	V	A	G	L	M	I	T	T
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.
Template Conservation
Template Sequence		D	P	I	D	I	M	V	E	L	R	S	Q	H	E	K	G	N	K	N	A	G	L	N	V	Y	T	G	E	V	V	D	M	W	E	N	D	V	I	E	P	L	R	I	K	T	Q	A	I	N	A	A	M	E	A	T	V	M	I	L	R	I
Template Known Secondary structure																T	T		T	T					T	T	T						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.