Job Description P0A6F5 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 5 Aligned Residues 469 % Identity 23% Template c1q2vA_ PDB info PDB header:chaperone Chain: A: PDB Molecule:thermosome alpha subunit; PDBTitle: crystal structure of the chaperonin from thermococcus strain ks-12 (nucleotide-free form) Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	K	D	V	K	F	G	N	D	A	R	V	K	M	L	R	G	V	N	V	L	A	D	A	V	K	V	T	L	G	P	K	G	R	N	V	V	L	D	K	S	F	G	A	P	T	I	T	K	D	G	V	S	V	A	R	E	I	E	L	E	D	K	F	E	N	M	G	A	Q	M	V	K	E	V	A	S	K	A
Query Conservation
Alig confidence																																																																.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		E	G	T	Q	R	Y	V	G	R	D	A	Q	R	L	N	I	L	A	A	R	I	I	A	E	T	V	R	T	T	L	G	P	K	G	M	D	K	M	L	V	D	S	L	G	D	I	V	V	T	N	D	C	A	T	I	L	D	K	I	D	L	Q	.	.	.	.	H	P	A	A	K	M	M	V	E	V	A	K	T	Q
Template Known Secondary structure		T	T																									G	G	G		S	T	T									T	T																S				.	.	.	.	S
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.					.	.	.	.	80	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																											.	.																	.	.	.	.	.
Query SS confidence																																																											.	.																	.	.	.	.	.
Query Sequence		N	D	A	A	G	D	G	T	T	T	A	T	V	L	A	Q	A	I	I	T	E	G	L	K	A	V	A	A	G	M	N	P	M	D	L	K	R	G	I	D	K	A	V	T	A	A	V	E	E	L	K	A	L	S	V	P	C	.	.	S	D	S	K	A	I	A	Q	V	G	T	I	S	A	N	S	.	.	.	.	.
Query Conservation																																																											.	.																	.	.	.	.	.
Alig confidence																																																											.	.																	.	.	.	.	.
Template Conservation
Template Sequence		D	K	E	A	G	D	G	T	T	T	A	V	V	I	A	G	E	L	L	R	K	A	E	E	L	L	D	Q	N	I	H	P	S	I	I	T	K	G	Y	A	L	A	A	E	K	A	Q	E	I	L	D	E	I	A	I	R	V	D	P	D	D	E	E	T	L	L	K	I	A	A	T	S	I	T	G	K	N	A	E	S
Template Known Secondary structure						S	S																						T	T																														T	T														T	T	S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
			155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.											.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure		.																				.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																				.	.	.	.	.	.	.	.	.	.
Query Sequence		.	D	E	T	V	G	K	L	I	A	E	A	M	D	K	V	G	K	E	G	.	.	.	.	.	.	.	.	.	.	V	I	T	V	E	D	G	T	G	L	Q	D	E	L	D	V	V	E	G	M	Q	F	D	R	G	Y	L	S	P	Y	F	I	N	K	P	E	T	G	A	V	E	L	E	S	P	F	I	L	L	A
Query Conservation		.																				.	.	.	.	.	.	.	.	.	.
Alig confidence		.																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	K	E	L	L	A	K	L	A	V	E	A	V	K	Q	V	A	E	K	K	D	G	K	Y	V	V	D	L	D	N	I	K	F	E	K	K	A	G	E	G	V	E	E	S	E	L	V	R	G	V	V	I	D	K	E	V	V	H	P	R	M	P	K	R	V	E	N	A	K	I	A	L	I	N	E	A	L	E	V	K
Template Known Secondary structure		G																			S	S	S						G	G	G								B	S		G	G	G					S	S				S				S	S	T	T	S		S			T	T								S		B	S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		224	.	.	.	.	.																		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	K	I	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	E	M	L	P	V	L	E	A	V	A	K	A	G	K	P	L	L	I	I	A	E	D	V	E	G	E	A	L	A	T	L	V	V	N	T	M	R	G	I	V	K	V	A	A	V	K	A	P	G	F	G	D	R	R	K
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	T	E	T	D	A	K	I	N	I	T	S	P	D	Q	L	M	S	F	L	E	Q	E	E	K	M	L	K	D	M	V	D	H	I	A	Q	T	G	A	N	V	V	F	V	Q	K	G	I	D	D	L	A	Q	H	Y	L	A	K	Y	G	I	M	A	V	R	R	V	.	.	.	.	.	.	.	.	.	.	.	K	K
Template Known Secondary structure				S	S								S	T																									T		S					S	S		B											T	T						S		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.												.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.				.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence		A	M	L	Q	D	I	A	T	L	T	G	G	T	V	I	S	E	E	I	G	M	E	L	E	K	A	T	L	E	D	L	G	Q	A	K	R	V	V	.	.	.	I	N	K	D	T	T	T	I	I	D	G	V	G	E	E	A	A	I	Q	G	R	V	A	Q	I	R	Q	Q	I	E	E	A	T	S	D	Y	D	R	E
Query Conservation																																								.	.	.
Alig confidence																		.	.	.	.	.																		.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	M	E	K	L	A	K	A	T	G	A	K	I	V	T	.	.	.	.	.	N	V	K	D	L	T	P	E	D	L	G	Y	A	E	V	V	E	E	R	K	L	A	G	E	N	M	I	F	V	E	G	C	K	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	S	.	.	.	.	.	S	G	G	G			G	G	G					S								T	T										S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.						.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.
Predicted Secondary structure																																																	.																							.
Query SS confidence																																																	.																							.
Query Sequence		K	L	Q	E	R	V	A	K	L	A	G	G	V	A	V	I	K	V	G	A	A	T	E	V	E	M	K	E	K	K	A	R	V	E	D	A	L	H	A	T	R	A	A	V	E	E	G	.	V	V	A	G	G	G	V	A	L	I	R	V	A	S	K	L	A	D	L	R	G	Q	.	N	E	D	Q	N	V	G	I	K
Query Conservation																																																	.																							.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																					.																							.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	K	A	V	T	I	L	I	R	G	G	T	E	H	V	I	D	E	V	E	R	A	L	E	D	A	V	K	V	V	K	D	V	M	E	D	G	A	V	L	P	A	G	G	A	P	E	I	E	L	A	I	R	L	D	E	Y	A	K	Q	V	G	G	K	E	A	L	A	I	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	S	S								S	S																								S							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470					.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.
Query SS confidence																															.	.	.	.
Query Sequence		V	A	L	R	A	M	E	A	P	L	R	Q	I	V	L	N	C	G	E	E	P	S	V	V	A	N	T	V	K	.	.	.	.	G	G	D	G	N	Y	G	Y	N	A	A	T	E	E	Y	G	N	M	I	D	M	G	I	L	D	P	T	K	V	T	R	S	A	L	Q	Y	A	A	S	V	A	G	L	M	I	T	T
Query Conservation																															.	.	.	.
Alig confidence																															.	.	.	.
Template Conservation
Template Sequence		N	F	A	D	A	L	K	I	I	P	K	T	L	A	E	N	A	G	L	D	T	V	E	M	L	V	K	V	I	S	E	H	K	N	R	G	L	G	I	G	I	D	V	F	E	G	K	P	A	D	M	L	E	K	G	I	I	E	P	L	R	V	K	K	Q	A	I	K	S	A	S	E	A	A	I	M	I	L	R	I
Template Known Secondary structure							T	T											T																			T	T					T	T	T	T									T																								T
Template Predicted Secondary structure
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
		518	.	520	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	C	M	V	T	D	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	D	V	I	A	A	K	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		519	520	.	.	.	.	.	.