Job Description P0A6F5 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 3 Aligned Residues 481 % Identity 69% Template c1iokE_ PDB info PDB header:chaperone Chain: E: PDB Molecule:chaperonin 60; PDBTitle: crystal structure of chaperonin-60 from paracoccus2 denitrificans Resolution 3.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	K	D	V	K	F	G	N	D	A	R	V	K	M	L	R	G	V	N	V	L	A	D	A	V	K	V	T	L	G	P	K	G	R	N	V	V	L	D	K	S	F	G	A	P	T	I	T	K	D	G	V	S	V	A	R	E	I	E	L	E	D	K	F	E	N	M	G	A	Q	M	V	K	E	V	A	S	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	K	E	V	K	F	N	S	D	A	R	D	R	M	L	K	G	V	N	I	L	A	D	A	V	K	V	T	L	G	P	K	G	R	N	V	V	I	D	K	S	F	G	A	P	R	I	T	K	D	G	V	S	V	A	K	E	I	E	L	S	D	K	F	E	N	M	G	A	Q	M	V	R	E	V	A	S	R	T
Template Known Secondary structure																												G	G	G		S	T	T									S	S	S	S																	S	S																	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	A	A	G	D	G	T	T	T	A	T	V	L	A	Q	A	I	I	T	E	G	L	K	A	V	A	A	G	M	N	P	M	D	L	K	R	G	I	D	K	A	V	T	A	A	V	E	E	L	K	A	L	S	V	P	C	S	D	S	K	A	I	A	Q	V	G	T	I	S	A	N	S	D	E	T	V	G	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	E	A	G	D	G	T	T	T	A	T	V	L	A	Q	A	I	V	R	E	G	L	K	A	V	A	A	G	M	N	P	M	D	L	K	R	G	I	D	V	A	T	A	K	V	V	E	A	I	K	S	A	A	R	P	V	N	D	S	S	E	V	A	Q	V	G	T	I	S	A	N	G	E	S	F	I	G	Q	Q
Template Known Secondary structure		G	G	G		S	T																						T	T																							T	T		B				S	T	T	T	T	T						T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	E	A	M	D	K	V	G	K	E	G	V	I	T	V	E	D	G	T	G	L	Q	D	E	L	D	V	V	E	G	M	Q	F	D	R	G	Y	L	S	P	Y	F	I	N	K	P	E	T	G	A	V	E	L	E	S	P	F	I	L	L	A	D	K	K	I	S	N	I	R	E	M	L	P	V	L	E	A	V	A
Query Conservation
Alig confidence																																																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	E	A	M	Q	R	V	G	N	E	G	V	I	T	V	E	E	N	K	G	M	E	T	E	V	E	V	V	E	G	M	Q	F	D	R	G	Y	L	S	P	Y	F	V	T	N	A	D	K	M	I	A	E	L	E	D	A	Y	I	L	L	H	E	K	K	L	S	S	.	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure											T	T	S								S	S	S													S				S		G	G	G				S	S	S	S													S	S		B			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.												230
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	G	K	P	L	L	I	I	A	E	D	V	E	G	E	A	L	A	T	L	V	V	N	T	M	R	G	I	V	K	V	A	A	V	K	A	P	G	F	G	D	R	R	K	A	M	L	Q	D	I	A	T	L	T	G	G	T	V	I	S	E	E	I	G	M	E	L	E	K	A	T	L	E	D	L	G	Q	A	K
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	P	Q	K	P	L	L	I	V	A	E	D	V	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	V	K	A	P	G	F	G	D	R	R	K	A	M	L	Q	D	I	A	I	L	T	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	M	L	G	R	A	K
Template Known Secondary structure												S		B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S			T	T														T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.																		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270																.	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	V	I	N	K	D	T	T	T	I	I	D	G	V	G	E	E	A	A	I	Q	G	R	V	A	Q	I	R	Q	Q	I	E	E	A	T	S	D	Y	D	R	E	K	L	Q	E	R	V	A	K	L	A	G	G	V	A	V	I	K	V	G	A	A	T	E	V	E	M	K	E	K	K	A	R	V	E	D	A	L	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	S	I	N	K	D	N	T	T	I	V	D	G	A	G	E	K	A	E	I	E	A	R	V	S	Q	I	R	Q	Q	I	E	E	T	T	S	D	Y	D	R	E	K	L	Q	E	R	V	A	K	L	A	G	G	V	A	V	I	R	V	G	G	M	T	E	I	E	V	K	E	R	K	D	R	V	D	D	A	L	N
Template Known Secondary structure							S	S						S																				T	T				S	S											T	T	S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.		.	.	.	.	.	.	.	.	480
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		A	T	R	A	A	V	E	E	G	V	V	A	G	G	G	V	A	L	I	R	V	A	S	K	L	A	D	L	R	G	Q	N	E	D	Q	N	V	G	I	K	V	A	L	R	A	M	E	A	P	L	R	Q	I	V	L	N	C	G	E	E	P	S	V	V	A	N	T	V	K	G	.	G	D	G	N	Y	G	Y	N	A
Query Conservation																																																																								.
Alig confidence																																																																								.
Template Conservation
Template Sequence		A	T	R	A	A	V	Q	E	G	I	V	V	G	G	G	V	A	L	V	Q	G	A	K	V	L	E	G	L	S	G	A	N	S	D	Q	D	A	G	I	A	I	I	R	R	A	L	E	A	P	M	R	Q	I	A	E	N	A	G	V	D	G	A	V	V	A	G	K	V	R	E	S	S	D	K	A	F	G	F	N	A
Template Known Secondary structure														T	T	T							G	G	G	G	G	S				S	S														T	T											T	S											S			S	T	T					T
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	E	E	Y	G	N	M	I	D	M	G	I	L	D	P	T	K	V	T	R	S	A	L	Q	Y	A	A	S	V	A	G	L	M	I	T	T	E	C	M	V	T	D	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	T	E	E	Y	G	D	M	F	K	F	G	V	I	D	P	A	K	V	V	R	T	A	L	E	D	A	A	S	V	A	G	L	L	I	T	T	E	A	M	I	A	E	K	P
Template Known Secondary structure		T	T	T									T																								T
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.