Job Description P0A6F5 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 14 Aligned Residues 458 % Identity 24% Template c1a6eA_ PDB info PDB header:chaperonin Chain: A: PDB Molecule:thermosome (alpha subunit); PDBTitle: thermosome-mg-adp-alf3 complex Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	D	A	R	V	K	M	L	R	G	V	N	V	L	A	D	A	V	K	V	T	L	G	P	K	G	R	N	V	V	L	D	K	S	F	G	A	P	T	I	T	K	D	G	V	S	V	A	R	E	I	E	L	E	D	K	F	E	N	M	G	A	Q	M	V	K	E	V	A	S	K	A	N	D	A	A	G	D	G
Query Conservation
Alig confidence																																																									.	.	.	.
Template Conservation																																																									.	.	.	.
Template Sequence		G	K	N	A	Q	R	N	N	I	E	A	A	K	A	I	A	D	A	V	R	T	T	L	G	P	K	G	M	D	K	M	L	V	D	S	I	G	D	I	I	I	S	N	D	G	A	T	I	L	K	E	M	D	V	E	.	.	.	.	H	P	T	A	K	M	I	V	E	V	S	K	A	Q	D	T	A	V	G	D	G
Template Known Secondary structure																						T	T		S	T	T									S	S	S														S	S				.	.	.	.	S																		S	S
Template Predicted Secondary structure																																																									.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.							.	.	.	.	160	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.
Query Sequence		T	T	T	A	T	V	L	A	Q	A	I	I	T	E	G	L	K	A	V	A	A	G	M	N	P	M	D	L	K	R	G	I	D	K	A	V	T	A	A	V	E	E	L	K	A	L	S	V	P	C	S	D	S	K	A	I	A	Q	V	G	T	I	S	A	N	S	D	.	.	.	.	.	.	E	T	V	G	K	L	I
Query Conservation																																																																					.	.	.	.	.	.
Alig confidence																																																																					.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	T	A	V	V	L	S	G	E	L	L	K	Q	A	E	T	L	L	D	Q	G	V	H	P	T	V	I	S	N	G	Y	R	L	A	V	N	E	A	R	K	I	I	D	E	I	A	E	K	S	T	D	D	A	T	L	R	K	I	A	L	T	A	L	S	G	K	N	T	G	L	S	N	D	F	L	A	D	L	V
Template Known Secondary structure																							T																														S												T	S	S	S				S	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		163	.	.	.	.	.	.											170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.																																																													.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.																																																													.	.	.
Query Sequence		A	E	A	M	D	K	V	.	.	.	.	.	.	.	.	.	.	G	K	E	G	V	I	T	V	E	D	G	T	G	L	Q	D	E	L	D	V	V	E	G	M	Q	F	D	R	G	Y	L	S	P	Y	F	I	N	K	P	E	T	G	A	V	E	L	E	S	P	F	I	L	L	A	D	K	K	I	S	N	.	.	.
Query Conservation									.	.	.	.	.	.	.	.	.	.																																																													.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																																																													.	.	.
Template Conservation
Template Sequence		V	K	A	V	N	A	V	A	E	V	R	D	G	K	T	I	V	D	T	A	N	I	K	V	D	K	K	N	G	G	S	V	N	D	T	Q	F	I	S	G	I	V	I	D	K	E	K	V	H	S	K	M	P	D	V	V	K	N	A	K	I	A	L	I	D	S	A	L	E	I	K	K	T	E	I	E	A	K	V	Q
Template Known Secondary structure													S	S	S					G	G	G									S		S	S						S					S				S	S	T	T	S		S											S	S		B	S					S	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
																230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	E	M	L	P	V	L	E	A	V	A	K	A	G	K	P	L	L	I	I	A	E	D	V	E	G	E	A	L	A	T	L	V	V	N	T	M	R	G	I	V	K	V	A	A	V	K	A	P	G	F	G	D	R	R	K	A	M	L	Q	D	I	A	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	D	P	S	K	I	Q	D	F	L	N	Q	E	T	N	T	F	K	Q	M	V	E	K	I	K	K	S	G	A	N	V	V	L	C	Q	K	G	I	D	D	V	A	Q	H	Y	L	A	K	E	G	I	Y	A	V	R	R	V	.	.	.	.	.	.	.	.	.	.	.	K	K	S	D	M	E	K	L	A	K	A
Template Known Secondary structure				S	T	T																								T							S	S		B												T						S		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.												.	.	.	.	.	.	320	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.				.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		T	G	G	T	V	I	S	E	E	I	G	M	E	L	E	K	A	T	L	E	D	L	G	Q	A	K	R	V	.	.	.	V	I	N	K	D	T	T	T	I	I	D	G	V	G	E	E	A	A	I	Q	G	R	V	A	Q	I	R	Q	Q	I	E	E	A	T	S	D	Y	D	R	E	K	L	Q	E	R	V	A	K	L
Query Conservation																														.	.	.
Alig confidence									.	.	.	.	.																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	A	K	I	V	T	.	.	.	.	.	D	L	D	D	L	T	P	S	V	L	G	E	A	E	T	V	E	E	R	K	I	G	D	D	R	M	T	F	V	M	G	C	K	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							B	S	.	.	.	.	.	S	G	G	G			G	G	G													T	T								S		S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.						.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure																																								.																							.
Query SS confidence																																								.																							.
Query Sequence		A	G	G	V	A	V	I	K	V	G	A	A	T	E	V	E	M	K	E	K	K	A	R	V	E	D	A	L	H	A	T	R	A	A	V	E	E	G	.	V	V	A	G	G	G	V	A	L	I	R	V	A	S	K	L	A	D	L	R	G	Q	.	N	E	D	Q	N	V	G	I	K	V	A	L	R	A	M	E	A	P
Query Conservation																																								.																							.
Alig confidence		.	.																																					.																							.
Template Conservation		.	.
Template Sequence		.	.	K	A	V	S	I	L	I	R	G	G	T	D	H	V	V	S	E	V	E	R	A	L	N	D	A	I	R	V	V	A	I	T	K	E	D	G	K	F	L	W	G	G	G	A	V	E	A	E	L	A	M	R	L	A	K	Y	A	N	S	V	G	G	R	E	Q	L	A	I	E	A	F	A	K	A	L	E	I	I
Template Known Secondary structure		.	.	S									S	T	T																													T	T	T																T	S																T
Template Predicted Secondary structure		.	.
Template SS confidence
				367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470					.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence		L	R	Q	I	V	L	N	C	G	E	E	P	S	V	V	A	N	T	V	K	.	.	.	.	G	G	D	G	N	Y	G	Y	N	A	A	T	E	E	Y	G	N	M	I	D	M	G	I	L	D	P	T	K	V	T	R	S	A	L	Q	Y	A	A	S	V	A	G	L	M	I	T	T	E	C	M	V
Query Conservation																						.	.	.	.
Alig confidence																						.	.	.	.
Template Conservation
Template Sequence		P	R	T	L	A	E	N	A	G	I	D	P	I	N	T	L	I	K	L	K	A	D	D	E	K	G	R	I	S	V	G	V	D	L	D	N	N	G	V	G	D	M	K	A	K	G	V	V	D	P	L	R	V	K	T	H	A	L	E	S	A	V	E	V	A	T	M	I	L	R	I	D	D	V	I
Template Known Secondary structure										T	S															T	T		T	T					T	T	T	T									T
Template Predicted Secondary structure
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.