Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	N	R	T	K	E	D	E	L	Y	R	E	M	C	R	V	V	G	K	V	V	L	E	M	R	D	L	G	Q	E	P	K	H	I	V	I	A	G	V	L	R	T	A	L	A	N	K	R	I	Q	R	S	E	L	E	K	Q	A	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																							?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		E	T	V	I	N	A	L	V	K
Secondary structure
SS confidence
Disorder									?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3fxh chain A Region: 9 - 19 Aligned: 11 Modelled: 11 Confidence: 13.8% Identity: 55% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:integron gene cassette protein hfx_cass2; PDBTitle: crystal structure from the mobile metagenome of halifax2 harbour sewage outfall: integron cassette protein hfx_cass2 Phyre2 PDB 2wl8 chain D Region: 3 - 36 Aligned: 34 Modelled: 34 Confidence: 11.3% Identity: 21% PDB header:protein transport Chain: D: PDB Molecule:peroxisomal biogenesis factor 19; PDBTitle: x-ray crystal structure of pex19p Phyre2 PDB 1s4n chain A Region: 9 - 16 Aligned: 8 Modelled: 8 Confidence: 8.9% Identity: 75% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: Glycolipid 2-alpha-mannosyltransferase Phyre2 PDB 1xrx chain D Region: 7 - 12 Aligned: 6 Modelled: 6 Confidence: 5.9% Identity: 67% PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein Phyre2 1 c3fxhA_ 2 c2wl8D_ 3 d1s4na_ 4 c1xrxD_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3fxhA_ 13.8 55 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:integron gene cassette protein hfx_cass2; PDBTitle: crystal structure from the mobile metagenome of halifax2 harbour sewage outfall: integron cassette protein hfx_cass2 2 c2wl8D_ 11.3 21 PDB header:protein transport Chain: D: PDB Molecule:peroxisomal biogenesis factor 19; PDBTitle: x-ray crystal structure of pex19p 3 d1s4na_ 8.9 75 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Glycolipid 2-alpha-mannosyltransferase 4 c1xrxD_ 5.9 67 PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0