|   |
177 | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | Q | T | A | D | I | L | M | P | V | K | H | L | L | P | D | N | F | H | I | G | I | N | V | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | G | C | F | L | A | A | G | F | E | K | E | C | L | N | L | V | N | K | L | G | N | D | K | I | K | L | V | L | E | L | T |
Query Conservation |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
| . | . |
Template Conservation |   |
  |
|
|
|
|   |
|
|   |
|
|
|   |   |   |
|   |   |   |   |
|   |
|
|
|
|   |
|
|
|
|   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |   |   |   |
|   |   |   |
|
|
| . | . | . | . |   |   |
|
| . | . |
Template Sequence |   |
N | S | E | A | L | E | L | V | K | E | A | I | D | K | A | G | Y | T | E | K | I | V | I | G | M | D | V | A | A | S | E | F | Y | R | D | G | K | Y | D | L | D | F | K | S | P | T | D | P | S | R | Y | I | T | G | D | Q | L | G | A | L | Y | Q | D | F | V | R | D | Y | P | V | . |
. |
. |
. |
V | S | I | E | . |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| T | T | T |
|  |  |  |  |  |
|
| G | G | G | G |  |  | T | T |  |  |
| T | T | T | T | S | S |
|
| G | G | G |
| B |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|  | . | . | . | . |  |  |  |  | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  | . | . | . | . |  |  |  |  | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
219 | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | |
|
|
|
. | 290 | . | . | |
|
  |
  |   |
235 | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | |
. | . | . | . | . | . | 270 | . | |
. | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
| . |
|
|
|
|
|
|
|  | . |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | R | N | P | I | P | V | T | P | E | A | R | A | I | F | D | S | L | H | Q | H | N | I | T | F | A | L | D | D | . |
F | G | T | G | Y | A | T | Y | . |
R | Y | L | Q | A | F | P | V | D | F | I | K | I | D | K | S | F | V | Q | M | A | S | V | D | E | I | S | G | H | I | V | D | N | I | V | E | L | A | R | K | P |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |
|
|
| . |
|
|   |   |   |   |   |   | . |   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   | . | . | . |   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|
|   |   |
|
|
|
|
|
|
|
|   |   | . | . | . | . | . | . | . |   |   |   |   |
|   |   |   |
Template Sequence |   |
D | P | F | D | Q | D | D | W | A | A | W | S | K | F | T | A | N | V | . |
. |
. |
G | I | Q | I | V | G | D | D | L | T | V | T | N | P | K | R | I | E | R | A | V | E | E | K | A | C | N | C | L | L | L | K | V | N | Q | I | G | S | V | T | E | A | I | Q | . |
. |
. |
. |
. |
. |
. |
A | C | K | L | A | Q | E | N |
Template Known Secondary structure |   |
|
| S |
| T | T |
|  |  |  |  |  |  |  |  |  | T |
| . | . | . | S | S |  |  |  |  | S | T | T | T | T | T |
|  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |
|  |  |  |  |
|
|  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|
|  |  |  |
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
293 | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | |
|
|
. | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 360 | . | . |
  |
  |   |
313 | . | . | . | . | . | . | 320 | . | . | |
|
|
|
. | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
| . | . | . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | L | S | I | V | A | E | G | V | E | . |
. |
. |
. |
T | Q | E | Q | A | D | L | M | I | G | K | G | V | H | F | L | Q | G | Y | L | Y | S | P | P | V | P | G | N | K | F | I | S | E | W |
Query Conservation |   |
|
|   |
|
|
|   |
|
|
| . | . | . | . |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
Template Conservation |   |
|   |   |   |
|
|
|   |   |
|
|
|
|   |
|   |   |
|
|
|
|
|
|   |   |   |   |   |   |
|
| . | . | . |   |
|   |   |   |
|   |
|
|   | . |   |
|
|
Template Sequence |   |
G | W | G | V | M | V | S | H | R | S | G | E | T | E | D | T | F | I | A | D | L | V | V | G | L | C | T | G | Q | I | K | . |
. |
. |
T | G | A | P | C | R | S | E | R | L | . |
A | K | Y |
Template Known Secondary structure |   |
T |
|  |  |  |  |  |
|
| S | S |
|
| S |
|
|  |  |  |  |  |  |  |  |  | T |
| S |  |  |  | . | . | . |
|
|
| S |
| S |  |  |  |  | . |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  | . | . | . |  |
|
|
|
|
|  |  |  |  | . |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
363 | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | |
|
|
. | . | . | . | . | . | 400 | . | . | . | |
. | . | . |
  |