Job Description P21514 Confidence 100.00% Date Thu Jan 5 11:38:25 GMT 2012 Rank 1 Aligned Residues 328 % Identity 18% Template c3pjwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23 Resolution 3.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	C	D	F	R	V	F	L	Q	E	F	G	T	T	V	H	L	S	L	P	G	S	V	S	E	K	E	R	L	L	L	K	L	L	M	Q	G	M	S	V	T	E	I	S	Q	Y	R	N	R	S	A	K	T	I	S	H	Q	K	K	Q	L	F	E	K	L	G	I	Q	S	D	I	T	F	W	R	D	I	F	F
Query Conservation
Alig confidence																																																																														.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		Q	N	L	V	T	R	I	R	G	G	E	F	A	V	L	A	P	G	M	T	R	E	E	A	L	Q	L	A	Q	S	L	D	S	A	L	S	S	L	Y	A	T	G	A	T	D	V	A	A	V	A	S	I	G	L	A	P	F	A	H	G	D	S	P	Q	A	V	L	S	L	G	D	Q	A	L	A	Q	.	.	.	.
Template Known Secondary structure		T	T							T	T								T																		T						T	S		S		T	T											T	T																	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		Q	Y	N	P	E	I	I	S	A	T	G	S	N	S	H	R	Y	I	N	D	N	H	Y	H	H	I	V	T	P	E	A	I	S	L	A	L	E	N	H	E	F	K	P	W	I	Q	P	V	F	C	A	Q	T	G	V	.	L	T	G	C	E	V	L	V	R	W	E	H	P	Q	T	G	I	I	P	P	D	Q	F	I
Query Conservation																																																									.
Alig confidence		.	.	.	.	.	.																	.	.																																.
Template Conservation		.	.	.	.	.	.																	.	.
Template Sequence		.	.	.	.	.	.	A	E	G	Q	G	E	Q	N	W	A	C	L	D	G	D	D	.	.	H	H	A	W	H	R	L	L	D	Q	A	L	N	Q	R	R	F	E	L	F	F	Q	P	V	V	A	A	Q	D	T	Q	L	V	L	H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	T	I	P	A	G	R	F	L
Template Known Secondary structure		.	.	.	.	.	.			S		S	S		S								S	.	.														T	T												S	S		T	T														T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.																	.	.
Template SS confidence
								387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.			.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	A	E	S	S	G	L	I	V	I	M	T	R	Q	L	M	K	Q	T	A	D	I	L	M	P	V	K	H	L	L	P	D	N	F	H	I	G	I	N	V	S	A	G	C	F	L	A	A	G	F	E	K	E	C	L	N	L	V	N	K	L	G	N	D	K	I	K	L	V	L	E	L	T	E	R	N	P	I	P
Query Conservation
Alig confidence																										.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.
Template Sequence		P	W	L	E	R	F	G	W	T	A	R	L	D	R	L	M	L	E	R	V	L	E	Q	M	.	.	.	.	.	.	A	G	H	E	E	S	L	A	L	N	L	S	S	A	T	L	A	D	P	Q	A	L	N	K	V	F	E	I	L	R	A	H	S	N	L	G	A	R	L	T	L	E	I	G	E	E	Q	L	P	E
Template Known Secondary structure						T	T	T																	G	.	.	.	.	.	.	G	G																S	S													T	G	G	G	T	T	T							G	G	G
Template Predicted Secondary structure																										.	.	.	.	.	.
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.							490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	P	E	A	R	A	I	F	D	S	L	H	Q	H	N	I	T	F	A	L	D	D	F	G	T	G	Y	A	T	Y	R	Y	L	Q	A	F	P	V	D	F	I	K	I	D	K	S	F	V	Q	M	A	S	V	D	E	I	S	G	H	I	V	D	N	I	V	E	L	A	R	K	P	G	L	S	I	V	A	E	G
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		Q	.	A	V	L	E	Q	L	T	R	R	L	R	E	L	G	F	S	L	S	L	Q	R	F	G	G	R	F	S	M	I	G	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	A	I	D	Q	E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L	P	L	I	A	E	R
Template Known Secondary structure			.													T	T										S		G	G	G	T	S	S							S						T	T	T	T	T	T	T	T	T																	T	T	T
Template Predicted Secondary structure			.
Template SS confidence
		540		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	T	Q	E	Q	A	D	L	M	I	G	K	G	V	H	F	L	Q	G	Y	L	Y	S	P	P	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	T	E	G	E	L	S	V	I	R	E	M	G	L	Y	G	V	Q	G	Q	L	F	G	E	P	K	P
Template Known Secondary structure				S									T	T	T		S				S	G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		619	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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