Phyre 2 alignment of P0AG80 with d2onsa1

Job Description P0AG80
Confidence 99.96% Date Thu Jan 5 11:28:23 GMT 2012

Rank 59 Aligned Residues 305

% Identity 10% Template d2onsa1

SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like

Resolution 1.55

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence	T	T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	.	Y	E	V	G	T	A	T	M	M	A	S	K	A	I	K	P
Query Conservation																																																																.
Alig confidence									.	.																														.									.	.	.													.
Template Conservation									.	.																														.									.	.	.
Template Sequence	V	K	L	K	V	F	H	A	.	.	G	S	L	T	E	P	M	K	A	F	K	R	A	F	E	E	K	H	P	N	V	E	V	Q	T	E	A	A	G	.	S	A	A	T	I	R	K	V	.	.	.	T	E	L	G	R	K	A	D	V	I	A	T	A	D	Y	T	L	I	Q	K	M	M	Y	P	E	F	A	N	W
Template Known Secondary structure									.	.	G	G	G																T	T										.									.	.	.		T	S					S					S	S									T	T	T	T		S
Template Predicted Secondary structure									.	.																														.									.	.	.
Template SS confidence
	33	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.

	104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A	S	G
Query Conservation
Alig confidence										.	.	.	.	.																																											.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.																																											.	.	.	.	.	.	.
Template Sequence	T	I	M	F	A	K	N	Q	I	.	.	.	.	.	V	L	A	Y	R	N	D	S	R	Y	A	D	E	I	N	S	Q	N	W	Y	E	I	L	K	R	P	D	V	R	F	G	F	S	N	P	N	D	D	P	C	G	Y	.	.	.	.	.	.	.	R	S	L	M	A	I	Q	L	A	E	L	Y	Y	N	D	P	T
Template Known Secondary structure										.	.	.	.	.						T	T	S	T	T	T	T	T			T	T	T						T	S	T	T								T	T	T						.	.	.	.	.	.	.													T	T		T	T
Template Predicted Secondary structure										.	.	.	.	.																																											.	.	.	.	.	.	.
Template SS confidence
	107	.	.	110	.	.	.	.	.						.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.								.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.

	184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	V	G	R	K	D	E	S	T	E	K	F	Y	N	G	D
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.
Template Sequence	I	F	D	E	L	V	A	K	N	S	N	L	R	F	S	E	D	N	G	S	Y	V	L	R	M	P	S	S	E	R	I	E	I	N	K	S	K	I	M	I	R	S	M	E	M	E	L	I	H	L	V	E	S	.	.	.	.	.	.	.	.	.	G	E	L	D	Y	F	F	I	Y	K	S	V	A	K	Q	H	G	F
Template Known Secondary structure						T	G	G	G	B	S							T	T									G	G	G			B		T	T	T					S	S	G	G	G								.	.	.	.	.	.	.	.	.	T	S		S												T	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.
Template SS confidence
	175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.										.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

	264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E	W	H	Q	K
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.																																	.
Template Conservation																																							.	.	.	.	.	.	.																																	.
Template Sequence	N	F	V	E	L	P	V	E	I	D	L	S	S	P	D	Y	A	E	L	Y	S	K	V	K	V	V	L	A	N	G	K	E	V	T	G	K	P	I	.	.	.	.	.	.	.	V	Y	G	I	T	I	P	K	N	A	E	N	R	E	L	A	V	E	F	V	K	L	V	I	S	E	E	G	Q	E	I	L	.	R	E
Template Known Secondary structure							T	T	T	S	S			G	G	G					T	T						T	T	S									.	.	.	.	.	.	.								T	T		T	T													S								.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.																																	.
Template SS confidence
	246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.								.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.

	344	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence	T	G	Y	L	P	I	T	K	A	A	Y	D	L	.	.	T	R	E	Q	G	F	Y	E
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence	L	G	Q	E	P	L	V	P	P	R	A	D	T	A	V	P	S	L	K	A	M	V	E
Template Known Secondary structure	T	T										S	S			G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
	318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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