Job Description P0AG80 Confidence 100.00% Date Thu Jan 5 11:28:23 GMT 2012 Rank 41 Aligned Residues 417 % Identity 13% Template d1y3na1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.60

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.
Predicted Secondary structure																							.																																																						.	.
Query SS confidence																							.																																																						.	.
Query Sequence		L	M	G	N	A	Q	A	V	T	T	I	P	F	W	H	S	M	E	G	E	L	.	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	.	.	G	T	A
Query Conservation																							.																																																						.	.
Alig confidence																							.															.																																							.	.
Template Conservation																																						.
Template Sequence		A	T	W	V	T	E	K	P	L	T	L	K	I	H	M	H	F	R	D	K	W	V	W	D	E	N	W	P	V	A	R	E	V	A	R	L	.	T	N	V	K	L	V	G	V	A	N	R	A	A	T	N	S	Q	E	Q	F	N	L	M	M	A	S	G	Q	L	P	D	I	V	G	G	D	N	L	K	D	K	F	I
Template Known Secondary structure		T	T		S		S	S											T	T	T					T	T	S										.		S							S		S	S		S											T	S	S	S			S					T	T
Template Predicted Secondary structure																																						.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		T	M	M	A	S	K	A	I	K	P	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	.	.	.	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q
Query Conservation																																																		.	.	.
Alig confidence																																																		.	.	.																							.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		R	Y	G	M	E	G	A	F	I	P	L	N	K	L	I	D	Q	N	A	P	N	L	K	A	F	F	K	T	H	P	E	V	Q	R	A	I	T	A	P	D	G	N	I	Y	Y	L	P	Y	V	P	D	G	L	V	S	R	G	Y	F	I	R	Q	D	W	L	D	K	L	H	L	K	T	P	.	.	.	Q	T	V	D
Template Known Secondary structure						T	T	S	B																													B		T	T	S		B										S															T	T					.	.	.		B
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.										.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.
Query Sequence		D	L	A	D	Y	A	A	K	L	K	A	S	G	M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	.	.	.	.	.	.	.	.	.	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N
Query Conservation																																																					.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	Y	T	V	L	K	A	F	K	E	K	D	P	N	G	N	G	K	A	D	E	I	P	F	I	N	R	D	P	E	E	V	F	R	L	V	N	F	W	G	A	R	S	T	G	S	N	T	W	M	D	F	Y	V	E	N	G	K	I	K	H	P	F	A	E	V	A	F	K	D	G	I	K	H	V	A	Q	W	Y
Template Known Secondary structure													S		T	T		S	S	S									S		T						G	G	G	G	G	T			S		S	S	S	S	T	T						T	T					G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure									.	.	.																																.	.	.																							.	.
Query SS confidence									.	.	.																																.	.	.																							.	.
Query Sequence		K	K	G	D	F	S	Y	.	.	.	V	G	R	K	D	E	S	T	E	K	F	Y	N	G	D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	.	.	.	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	.	.	N	A	I	I	G	G	A	S	L	W	V	M
Query Conservation									.	.	.																																.	.	.																							.	.
Alig confidence									.	.	.																																.	.	.																							.	.
Template Conservation
Template Sequence		K	E	G	L	I	D	P	E	I	F	T	R	K	A	R	S	R	E	Q	T	F	G	N	N	I	G	G	M	T	H	D	W	F	A	S	T	A	L	F	N	D	A	L	S	K	N	I	P	G	F	K	L	V	P	M	A	P	P	I	N	S	K	G	Q	R	W	E	E	D	A	R	Q	I	P	R	P	D	G	W	A
Template Known Secondary structure			T	T	S	B		T	T	T	T	T	S	G	G	G						T	T	T	T																			S	T	T	T	S	T	T										B		T	T	S		B		B						S	S		S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340																																.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	K	T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	A	T	N	K	N	P	V	E	T	I	K	L	F	D	F	Y	F	G	P	K	G	R	E	L	S	N	F	G	V	P	G	L	T	Y	D	I	K	N	G	K	P	V	Y	K	D	T	V	L	K	A	A	Q	P	V	N	N	Q	M	Y	D	I	G	A	Q	I	P	I	G	F	W	Q	D	Y	E	Y	E	R	Q
Template Known Secondary structure			B	T	T		S												T	T	S												B	T	T	T					T	T										T		S	S								T	T	T		S		S	S	S										T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.										.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.						.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Query Sequence		Y	E	K	N	P	G	A	D	T	A	T	R	Q	M	L	N	K	P	P	L	P	F	T	K	G	L	R	L	G	N	.	.	.	.	.	.	.	.	.	M	P	Q	I	R	V	I	V	D	E	E	L	E	S	V	W	T	G	K	K	T	P	Q	Q	A	L	D	T	A	V	E	R	.	.	.	.	.	G	N	Q	L
Query Conservation																																.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Template Conservation
Template Sequence		W	T	N	D	V	A	L	Q	G	I	D	M	Y	I	K	N	K	Y	V	L	P	Q	F	T	G	V	N	L	T	V	E	E	R	E	I	Y	D	K	Y	W	P	D	V	K	T	Y	M	F	E	M	G	Q	S	W	V	M	G	T	K	D	P	E	K	T	W	N	D	Y	Q	Q	Q	L	K	N	R	G	F	Y	Q	V
Template Known Secondary structure		T																T		B																																						T	S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		429	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	R	F	E	K	S	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	I	V	M	Q	K	A	Y	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		479	480	.	.	.	.	.	.	.