Job Description P0AG80 Confidence 99.97% Date Thu Jan 5 11:28:23 GMT 2012 Rank 55 Aligned Residues 284 % Identity 14% Template d1xvxa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.53

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	V	T	T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	G	T	A	T	M	M	A	S	K	A	I
Query Conservation
Alig confidence															.	.	.															.												.
Template Conservation															.	.	.															.												.
Template Sequence		S	N	D	S	G	I	V	V	Y	N	A	Q	H	.	.	.	E	N	L	V	K	S	W	V	D	G	F	T	K	D	.	T	G	I	K	V	T	L	R	N	G	G	.	D	S	E	L	G	N	Q	L	V	Q	E	G	S	A	S	P	A	D	V	F	L	T	E	N	S	P	A	M	V	L	V	D	N	A	K	L	F
Template Known Secondary structure					S								S		.	.	.															.												.												G	G	G				S					S	S	S									T	T		B
Template Predicted Secondary structure															.	.	.															.												.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.															.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.															.	.	.
Template Sequence		A	P	L	D	A	V	T	Q	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	Q	E	Y	R	P	E	H	G	R	W	T	G	I	A	A	R	S	T	V	F	V	Y	N	P	E	K	I	S	E	A	E	.	.	.	.	.	L	P	K	S	I	M	D	L	A	K	P	E	W	K	.	.	.
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B		G	G	G	S		S	S	S	S															T	T	T	S		G	G	G	.	.	.	.	.	S		S	S	G	G	G	G	G	S	G	G	G	T	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.															.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.																.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.						120	.	.	.	.	.	.	.	.	.	130	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	V	G	R	K	D	E	S	T	E	K	F	Y	N
Query Conservation
Alig confidence		.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation		.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		.	.	.	.	.	G	R	W	A	A	S	P	S	G	A	D	F	Q	A	I	V	S	A	M	L	E	L	K	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	T	L	E	W	L	K	A	M	K	T	N	F	T	A	Y	K	G	.	.	N	S	T	V	M	K	A	V	N	A
Template Known Secondary structure		.	.	.	.	.	T	S					T	T	S																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		S	S	.	.										T
Template Predicted Secondary structure		.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
							134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																				.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E	W	H
Query Conservation
Alig confidence																																											.	.	.	.	.
Template Conservation																																											.	.	.	.	.
Template Sequence		G	Q	I	D	G	G	V	I	Y	H	Y	Y	R	F	V	D	Q	A	K	T	G	E	N	S	G	K	T	Q	L	H	Y	F	K	H	Q	D	P	G	A	F	V	.	.	.	.	.	S	I	S	G	G	G	V	L	A	S	S	K	H	P	K	E	A	Q	E	F	V	K	W	I	T	G	K	S	G	Q	D	I	L	R
Template Known Secondary structure		T	S	S	S						T								T	T	T		T	T	T	T	T								T	T		G	G	G			.	.	.	.	.								B	T	T		S	S													S
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.						.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		342	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		Q	K	T	G	Y	.	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		T	N	N	A	F	E	Y	A	V	G	V	D	A	A	S	N	P	K	L	V	P	L	K	D
Template Known Secondary structure			S	S	S			B			B	T	T					T	T	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions