Job Description P0AG80 Confidence 100.00% Date Thu Jan 5 11:28:23 GMT 2012 Rank 36 Aligned Residues 363 % Identity 17% Template d1ursa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.45

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	.	V	Y	E	V	G	T	A	T	M	M	A	S	K	A	I	K	P	V
Query Conservation																																																															.
Alig confidence																																								.																							.
Template Conservation																																								.
Template Sequence		T	I	T	V	W	S	W	Q	T	G	P	E	L	Q	D	V	K	Q	I	A	A	Q	W	A	K	A	H	G	D	K	V	I	V	V	D	Q	S	S	.	N	P	K	G	F	Q	F	Y	A	T	A	A	R	T	G	K	G	P	D	V	V	F	G	M	P	H	D	N	N	G	V	F	A	E	E	G	L	M	A	P	V
Template Known Secondary structure								S																														T	T	.		T	T		T	T								T	T				S							G	G	G							T	T		B
Template Predicted Secondary structure																																								.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A	S	G	M
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Sequence		P	S	G	V	L	N	T	G	.	.	.	.	.	.	.	.	L	Y	A	P	N	T	I	D	A	I	K	V	N	G	T	M	Y	S	V	P	V	S	V	Q	V	A	A	I	Y	Y	N	K	K	L	V	.	.	.	.	.	.	.	P	Q	P	P	Q	T	W	A	E	F	V	K	D	A	N	A	H	G	F	M	Y	D
Template Known Secondary structure			T	T	S			G	G	.	.	.	.	.	.	.	.	G	S							T	T			T	T				S														T	T	T		.	.	.	.	.	.	.	S	S				S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.									.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.								.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	.	V	G	R	K	D	E	S	T	E	K	F	Y	N	G	D
Query Conservation																																																																		.
Alig confidence		.	.	.	.	.	.	.	.																																																									.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Q	A	N	L	Y	F	D	Y	A	I	I	G	G	Y	G	G	Y	V	F	K	D	N	N	G	T	L	D	P	N	N	I	G	L	D	T	P	G	A	V	Q	A	Y	T	L	M	R	D	M	V	S	K	Y	H	W	M	T	P	S	T	N	G	S	I	A	K	A	E	F	L	A	G	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	T												T	T								T	T									S	S	S																T	S		S			T	T												T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E	W	H	Q	K
Query Conservation
Alig confidence																			.	.	.																																	.	.
Template Conservation																			.	.	.																																	.	.
Template Sequence		I	G	M	Y	V	S	G	P	W	D	T	A	D	I	E	K	A	.	.	.	K	I	D	F	G	V	T	P	W	P	T	L	P	N	G	K	H	A	T	P	F	L	G	V	I	T	A	F	V	N	K	E	.	.	S	K	T	Q	A	A	D	W	S	L	V	Q	A	L	T	S	A	Q	A	Q	Q	M	Y	F	R	D
Template Known Secondary structure			S						G	G	G							T	.	.	.	T												T	T	S															B	T	T	.	.		S													T	S
Template Predicted Secondary structure																			.	.	.																																	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.				.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E	K	N	P	G	A	D	T	A	T	R	Q	M	L	N	K	P	P	L	P	F	T	K	G	L	R	L	G	N	M	P	Q	I	R	V	I	V	D	E	E	L	E	S	V	W	T	G	K	K	T	P	Q	Q	A	L	D	T	A	V	E
Query Conservation
Alig confidence																			.	.	.	.																							.	.	.	.	.										.
Template Conservation																			.	.	.	.																							.	.	.	.	.										.
Template Sequence		S	Q	Q	I	P	A	L	L	S	V	Q	R	S	S	A	V	Q	.	.	.	.	S	S	P	T	F	K	A	F	V	E	Q	L	R	Y	A	V	P	M	P	N	I	P	.	.	.	.	.	Q	M	Q	A	V	W	Q	A	M	.	S	I	L	Q	N	I	I	A	G	K	V	S	P	E	Q	G	A	K	D	F	V	Q
Template Known Secondary structure							S	S					T	S					.	.	.	.	T											G	G	G							S	T	.	.	.	.	.									T	.	T								T	S	S
Template Predicted Secondary structure																			.	.	.	.																							.	.	.	.	.										.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360						.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		424	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	N	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	I	Q	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions